View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_low_12 (Length: 301)
Name: NF18845_low_12
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 28718191 - 28717916
Alignment:
| Q |
11 |
cataggatgagattgatacttgtttccaagtctctagctgcattttttacgtcaaattcatcaaaactattgtgtccttctaaaggaagccattttactg |
110 |
Q |
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| T |
28718191 |
cataggatgagattgatacttgtttccaagtctctagctgcattttttacgtcaaattcatcaaaactattgtgtccttctaaaggaagccattttactg |
28718092 |
T |
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| Q |
111 |
aaaaagggatacttgaaatacagaaataagtctagtacaactaaggaataaaatcataaagacttttatgaacaaaatgttgtattctctaacaaggtta |
210 |
Q |
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| T |
28718091 |
aaaaagggatacttgaaatacagaaataagtctagtacaactaaggaataaaatcataaagacttttatgaacaaaatgttgtattctctaacaaggtta |
28717992 |
T |
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| Q |
211 |
aataatggatatctcaatattattatggaaaatatgtttatagttaaagggtgaaggtgaaagcaaggtatatttt |
286 |
Q |
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| T |
28717991 |
aataatggatatctcaatattattatggaagatatgtttatagttaaagggtgaaggtgaaagcaaggtatatttt |
28717916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 13415724 - 13415987
Alignment:
| Q |
11 |
cataggatgagattgatacttgtttccaag-tctctagctgcattttttacgtcaaattcatcaaaactattgtgtccttctaaaggaagccattttact |
109 |
Q |
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||||||||||||||| ||| |||| |||| ||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||| | |
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| T |
13415724 |
cataggatgagattggtacctgttgccaaaatctttagctgcattttttaggtcaagttcatcaaaactaaagtgtccttctaaaggaagtgttttcaag |
13415823 |
T |
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| Q |
110 |
gaaaaagggatacttgaaatacagaaat-aagtctagt------acaactaaggaataaaatcataaagacttttatgaacaaaatgttgtattctctaa |
202 |
Q |
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| T |
13415824 |
gaaaaagggatgcttgaaatacaaaaattaagtctaatggttatacaactaaggaataaaatcatgaagccttttatgaatagaatgttgtattcactta |
13415923 |
T |
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| Q |
203 |
caaggttaaataatggatatctcaatattattatggaaaatatgtttatagttaaagggtgaag |
266 |
Q |
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||||| ||||| |||||| | |||| || |||||||| |||||||| |||||||||||||||| |
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| T |
13415924 |
caaggctaaatgatggatgtttcaaattttttatggaatatatgtttgtagttaaagggtgaag |
13415987 |
T |
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