View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_low_13 (Length: 294)
Name: NF18845_low_13
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 7783961 - 7784231
Alignment:
| Q |
17 |
agttttcagaataacaaaattagtaatgttttgtaatgttacgcttgattattctcaaatactaaaatctagatctttatttccaccaaaataatatgg- |
115 |
Q |
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| T |
7783961 |
agttttcagaagaacaaaattagtaatgttttgtaatgttacgcttgattattctcaaatactaatatctagatctttatttccaccaaaagaatatggg |
7784060 |
T |
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| Q |
116 |
atgcatgagtacgtgtaggggataaatttt-aatattctttagatatctttatatttgagttctataaacaaacaaaaattgaaagaacatttgatatgc |
214 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7784061 |
atgcatgagtacgtgtagggaataaatttttaatattttttagatatctttatatttgagttctataaacaaacaaaaattggaagaacatttgatatgc |
7784160 |
T |
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| Q |
215 |
tatgcctcgagttattcattcttacatttaatgtgtgtaagttttatcgtcagatttgtttaaagaataat |
285 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7784161 |
tatgactcgagttattcattcttacatttaatgtgtgtaagttttatcgtcagatttgtttaaagaataat |
7784231 |
T |
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