View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_low_15 (Length: 287)
Name: NF18845_low_15
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 35651939 - 35651682
Alignment:
| Q |
15 |
atcaacaactcaccgcttacattgtacaagctttaactaccattccttgatagcacacactgtcataaccaatgatcatttagattgaaatcatgttgtc |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35651939 |
atcaacaactcaccgcttacactgtacaagctttaactaccattccttgatagcacacactgtcataaccaatgatcatttagattgaaatcatgttgtc |
35651840 |
T |
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| Q |
115 |
cattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtcaagattagtaattggatgcttcactctcaaac |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35651839 |
cattaattaatcaacattgaagtggttgtgttgaggaagaaatcaaatccatcttttaagttgcagtcaagattagtaattggatgcttccctctcaaac |
35651740 |
T |
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| Q |
215 |
taatagattgattgnnnnnnnngtttgtttgaagtaggtgtccattttaaaacaggatat |
274 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35651739 |
taatagattgattgttttttt--tttgtttgaagtaggtgtccattttaaaacaggatat |
35651682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 26157578 - 26157316
Alignment:
| Q |
15 |
atcaacaactcaccgcttacattgtacaagctttaactaccattccttgatagcacacactgtcataaccaatgatcatttagattgaaatcatgttgtc |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
26157578 |
atcaacaactcaccgcttacactgtacaagctttaactaccattccttgatagcaaacactgtcataaccaattatcatttagattgaaatcatgttttc |
26157479 |
T |
|
| Q |
115 |
cattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtcaagattagtaattggatgcttcactctcaaac |
214 |
Q |
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| T |
26157478 |
cattaattaatcaacattgaagtggttgggtggaggaagaaatcaaatccatcttttaagttgcagtcaagattagtaattggatgcttcactctcaaac |
26157379 |
T |
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| Q |
215 |
taatagattgattg---nnnnnnnngtttgtttgaagtaggtgtccattttaaaacaggatat |
274 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
26157378 |
taatagattgattgtttttttttgtttttgttttaagtaggtgtccattttaaaacaggatat |
26157316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 2217610 - 2217398
Alignment:
| Q |
15 |
atcaacaactcaccgcttacattgtacaagctttaactaccattccttgatagcacacactgtcataaccaatgatcatttagattgaaatcatgttgtc |
114 |
Q |
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|||||||||| |||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2217610 |
atcaacaacttgccgcgtaaactgtacaagctttaactaccatcccttgatagcacacactgtcataaccaatgatcattg-gattgaaatcatgttgtc |
2217512 |
T |
|
| Q |
115 |
cattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtcaagattagtaattggatgcttcactctcaaac |
214 |
Q |
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|||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
2217511 |
cattaattaatcaatattgaagtggttgggtgggggaagaaatcaaatccatcttttacgttgcattcaagattagtaattgaatgcttcactctcaaac |
2217412 |
T |
|
| Q |
215 |
taatagattgattg |
228 |
Q |
| |
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||| ||||||||| |
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| T |
2217411 |
caatggattgattg |
2217398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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