View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_high_1 (Length: 644)

Name: NF18846_high_1
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_high_1
NF18846_high_1
[»] chr1 (1 HSPs)
chr1 (1-631)||(7339922-7340557)


Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 7340557 - 7339922
Alignment:
Q  1 cacgacaatttttatcttctatatgggtgtctgttctcttgtaggttcatgatacccttgtcttgtggggttttaagattttgctcccatgtgacttaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7340557 cacgacaaattttatcttctatatgggtgtctgttctcttgtaggttcatgatacccttgtcttgtggggttttaagattttgctcccatgtgacttaat 7340458  T
Q  101 cataggccatatttatgttatatccttannnnnnnnnnnnnnnnnnnnnnnnctcaagagaagaaaagatttttcaaaagtggaagaaaggttaggtaaa 200  Q
    ||||||||||||||||| ||||||||||                        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7340457 cataggccatatttatggtatatccttattttggcttttcttttccttttttctcaagagaagaaaagatttttcaaaagtggaagaaaggttaggtaaa 7340358  T
Q  201 tgtatacacgtagtagnnnnnnnnnatagtagctagctagtgtgttagagttaaatgtgtccaattgatgtactttttataggtgatgaattggatatat 300  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7340357 tgtatacacgtagtagtttttttt-atagtagctagctagtgtgttagagttaaatgtgtccaattgatgtactttttataggtgatgaattggatatat 7340259  T
Q  301 tttcttggacttttttcctcaagaaagaaaagaatgaattcatacgtatgttagcttttatgaataacttaaaagtttgtatgatggatataattttcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7340258 tttcttggacttttttcctcaagaaagaaaagaatgaattcatacgtatgttagcttttatgaataacttaaaagcttgtatgatggatataattttcta 7340159  T
Q  401 gttaacgcgtcaaactaaaatactacatataggtgattagcttgtctatatatgtattatgtaggctatatgcaaattattttgtgtt-gaaaaagttaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7340158 gttaacgcgtcaaactaaaatactacatataggtgattagcttgtctatatatgtattatgtaggctatatgcaaattattttgtgttagaaaaagttaa 7340059  T
Q  500 attatattcccctcctaaaagagnnnnnnnnnaattacactttagctcattc-----tatcttatcttatgttattaaaattcacacacttcaacttctt 594  Q
    |||||||||||||||||||||||         ||||||||||||||||||||     ||||||||||||||||| |||||||||| ||||||||||||||    
T  7340058 attatattcccctcctaaaagagtttttttttaattacactttagctcattctatcttatcttatcttatgttactaaaattcacgcacttcaacttctt 7339959  T
Q  595 atggttcatcctaccttcaacatgtttaaagtatgat 631  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7339958 atggttcatcctgccttcaacatgtttaaagtatgat 7339922  T

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