View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_high_11 (Length: 325)

Name: NF18846_high_11
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_high_11
NF18846_high_11
[»] chr1 (1 HSPs)
chr1 (14-310)||(5107456-5107752)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 5107752 - 5107456
Alignment:
Q  14 aaatggaacaaaacatcgaaacaatggaaacgaggtttgatcttttacatggatcaatcacaacagcatcaagaagagtacaccctttacaatccttatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107752 aaatggaacaaaacatcgaaacaatggaaacgaggtttgatcttttacatggatcaatcacaacagcatcaagaagagtacaccctttacaatccttatc 5107653  T
Q  114 catgtcaagaaaagcacttgatacaagaatcaatagagcaatttctcctgctcttgcacttctcgaaactttcaaactcgctgagtctctccagaacaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107652 catgtcaagaaaagcacttgatacaagaatcaatagagcaatttctcctgctcttgcacttctcgaaactttcaaactcgctgagtctctccagaacaat 5107553  T
Q  214 ctccttaacctctcttcaaagctatcaacagaaaagactcatcaaaagaggctttcaaagcttctagattacatggattgtgttgatcagttaaatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107552 ctccttaacctctcttcaaagctatcaacagaaaagactcatcaaaagaggctttcaaagcttctagattacatggattgtgttgatcagttaaatg 5107456  T

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