View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18846_high_13 (Length: 278)
Name: NF18846_high_13
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 3016420 - 3016288
Alignment:
| Q |
13 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaatactatcacttttc |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016420 |
catcatcaatcccaaaatgcctcccaaacattttctgtcgttcctcagaattgctgccaacaatctgcaaacaaagttcaacagaatactatcacttttc |
3016321 |
T |
|
| Q |
113 |
tatcaatgtaaaaatgttactagtttatgataa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3016320 |
tatcaatgtaaaaatgttactagtttatgataa |
3016288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 3016264 - 3016195
Alignment:
| Q |
196 |
tttctttctcaacatcacaatcatagttataaaaattccatttatttgggaatcaaagaagttcaatatg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016264 |
tttctttctcaacatcacaatcatagttataaaaattccatttatttgggaatcaaagaagttcaatatg |
3016195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 40670790 - 40670871
Alignment:
| Q |
15 |
tcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacag |
96 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||| |
|
|
| T |
40670790 |
tcatcaatccaaaaatgcctcccaaacattttctgtcgttcctcagaactgctgccaacaatctgcaaaccaagttgaacag |
40670871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 40670971 - 40671084
Alignment:
| Q |
103 |
atcacttttctatcaatgtaaaaatgttactagtttatgataaaactatggctacaaataacttataataacagacattagtcannnnnnnnctttcttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||| |||||||| |
|
|
| T |
40670971 |
atcacttttctatcaatgtaaaaatgttactagtttatgataaaactacagctacaaataaact-taa-aacagacattagtcaattcttttctttcttt |
40671068 |
T |
|
| Q |
203 |
ctcaacatcacaatca |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40671069 |
ttcaacatcacaatca |
40671084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 44630288 - 44630203
Alignment:
| Q |
13 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaa |
98 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
44630288 |
catcatcaatctcaaaatgcctcccgaacattttctgctgttcttcagaattgctgccaacaatctgcaaacaaagttgaacagaa |
44630203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 44608314 - 44608229
Alignment:
| Q |
13 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaa |
98 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||| |
|
|
| T |
44608314 |
catcattaatcccaaaatgtctcccaaacattttctgctgttcctcagaatttctgcctacaatctgcaaaccaagttgaacagaa |
44608229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University