View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_high_21 (Length: 232)
Name: NF18846_high_21
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 31215703 - 31215906
Alignment:
| Q |
19 |
tgtttgtcatcttaggtgctctagtactagtattttgtgggttgggaatttcaatgtatattatttatcggagagcaagaaagacaaaaaacaaggataa |
118 |
Q |
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| T |
31215703 |
tgtttgtcatcttaggtgctctagtactagtattttctgggttgggaatttcaatgtatattatttatcggagagcaagaaagacaaaaaacaaggataa |
31215802 |
T |
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| Q |
119 |
agattctaatgaagcacaagcagaagaagtcttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgat |
218 |
Q |
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| T |
31215803 |
agattctaatgaagcacaagcagaagaagtcttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgat |
31215902 |
T |
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| Q |
219 |
gatg |
222 |
Q |
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|||| |
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| T |
31215903 |
gatg |
31215906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 31058594 - 31058649
Alignment:
| Q |
150 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctac |
205 |
Q |
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| T |
31058594 |
ttttccatttggagtcatgatggaaaaatgatgtttgaaaatattattgaagctac |
31058649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 31140397 - 31140467
Alignment:
| Q |
150 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
220 |
Q |
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| T |
31140397 |
ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31140467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 31153412 - 31153482
Alignment:
| Q |
150 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
220 |
Q |
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| T |
31153412 |
ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31153482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 31103038 - 31103108
Alignment:
| Q |
150 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
220 |
Q |
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| T |
31103038 |
ttttcgatttggagccatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31103108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 31184130 - 31184191
Alignment:
| Q |
159 |
tggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
220 |
Q |
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| T |
31184130 |
tggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatga |
31184191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 37027180 - 37027232
Alignment:
| Q |
150 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagc |
202 |
Q |
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| T |
37027180 |
ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagc |
37027232 |
T |
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