View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_high_4 (Length: 537)
Name: NF18846_high_4
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 41087766 - 41087248
Alignment:
| Q |
13 |
aatatcgttgtcaccaatgtcactttttatttctcattgttaagataaatttacatttacatagaccaattccattttcacgcatatttaagatacacat |
112 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41087766 |
aatatcgttgtcactaatgtcactttttatttcccattgttaagataaatttacatttacatagaccaattccattttcacgcatatttaagatacacat |
41087667 |
T |
|
| Q |
113 |
gttcataatatccgagtcaattttctacaaacaccgattcnnnnnnngaatatctat----aaacaaagaggttgtttgttagctcaattaatttgaacc |
208 |
Q |
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| T |
41087666 |
gttcataatat-cgagtcaattttccacaaacaccgattcaaaaaaagaatatctataacaaattaaagaggttgtttgttagctcaattaatttgaacc |
41087568 |
T |
|
| Q |
209 |
aaaggttnnnnnnnnnnnnnnnnnnnttgaagtattgagttcaaactcgagtaaacgagaaaaaactaatctaacaattaatt--nnnnnnnnntccaca |
306 |
Q |
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| T |
41087567 |
aaaggttaaaaaaaaaaaaaaaaaatttgaagtattgagttcaaactcgggtaaacgagaaaaaactaatctaacaattaattaaaaaaaaaaatccaca |
41087468 |
T |
|
| Q |
307 |
aacaaaataagagttcatcaagcaaaaacacaaatttatttgtaatagcctccaatgcaatagtaagcaccatccaatgcaacaataacaatacaacacc |
406 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41087467 |
aacaaaataagagttcatcaagc-aaaccacaaatttatttgtaatagcctgcaatgcaatagtaagcaccatccaatgc------aacaatacaacacc |
41087375 |
T |
|
| Q |
407 |
tatgaagccaaataaaggaatacaactgagggatactaagcactaaaaaggagattgtcaaccaacaataagtaagtatctttgttaggaataaaataaa |
506 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
41087374 |
tatgaagccaaataaaggaatacaactgagggatactgagcactaaaaaggagattgtcaaccaac---acctaagtatctttgttaggaataaaataaa |
41087278 |
T |
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| Q |
507 |
gctgcctattatactgataaaataaaacca |
536 |
Q |
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| T |
41087277 |
gctgcctattatactgataaaataaaacca |
41087248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 41090101 - 41089907
Alignment:
| Q |
13 |
aatatcgttgtcaccaatgtcactttttatttctcattgttaagataaatttacatttacatagaccaattccattttcacgcatatttaagatacacat |
112 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||| |
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| T |
41090101 |
aatatcgttgtcaccaatgtcgctttttatttctcattgctaagataaatttacatttacatagagcattttcattttcacaaatatttaagatacacat |
41090002 |
T |
|
| Q |
113 |
gttcataatatccgagtcaattttctacaaacaccgattc-nnnnnnngaatatctataaacaaagaggttgtttgttagctcaattaatttgaac |
207 |
Q |
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||| ||| || |||||||||||||||||| || | |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
41090001 |
gtttatagtagtcgagtcaattttctacaagcatc-attcgaaaaaaagaatatctataaacaaagagtttgtttgttagctcaattgatttgaac |
41089907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 41076664 - 41076565
Alignment:
| Q |
48 |
attgttaagataaatttacatttacatagaccaattccattttcacgcatatttaagatacacatgttcataat-atccgagtcaattttctacaaacac |
146 |
Q |
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||||||||||||||| | || | ||||||| || |||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
41076664 |
attgttaagataaatgtgcactcacatagagcatttccattttcactcatatttaaaatacacaagttcataatcgaccgagtcaattttctacaaacac |
41076565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 41089882 - 41089777
Alignment:
| Q |
240 |
gtattgagttcaaactcgagtaaacgagaaaaaactaatctaacaattaattnnnnnnnnntccacaaacaaaataagagttcatcaagcaaaaacacaa |
339 |
Q |
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|||| |||||||||| | ||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
41089882 |
gtatcgagttcaaacccaagtgaaggagaaaaaaataatctaacaattaattaaaaaaa----cacaaacaaaataagagttcatcaagcaaaaacgcaa |
41089787 |
T |
|
| Q |
340 |
atttatttgt |
349 |
Q |
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|||||||||| |
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|
| T |
41089786 |
atttatttgt |
41089777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 41076425 - 41076375
Alignment:
| Q |
301 |
tccacaaacaaaataagagttcatcaagcaaaaacacaaatttatttgtaa |
351 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
41076425 |
tccacaaacaaaataagagttcatcaagaaaaaatacaaaattatttgtaa |
41076375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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