View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_high_5 (Length: 468)

Name: NF18846_high_5
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_high_5
NF18846_high_5
[»] chr1 (8 HSPs)
chr1 (291-388)||(4203224-4203321)
chr1 (148-246)||(7277270-7277368)
chr1 (205-248)||(4203322-4203365)
chr1 (168-227)||(24361088-24361147)
chr1 (11-42)||(4203426-4203457)
chr1 (148-183)||(7277196-7277231)
chr1 (154-183)||(4203351-4203380)
chr1 (13-42)||(7277118-7277147)
[»] chr3 (6 HSPs)
chr3 (168-243)||(421507-421582)
chr3 (171-227)||(404511-404567)
chr3 (167-214)||(6455955-6456004)
chr3 (167-214)||(6760843-6760892)
chr3 (13-42)||(421341-421370)
chr3 (116-153)||(6456004-6456041)
[»] chr6 (2 HSPs)
chr6 (168-227)||(24181015-24181074)
chr6 (13-42)||(24181211-24181240)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 4203321 - 4203224
Alignment:
Q  291 aatatttaatgtacgaggttgtcgttttccggatatataattatcttctgtgtgtatactaccaaaccgttattaataaacagaaaccgatacccttc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4203321 aatatttaatgtacgaggttgtcgttttccggatatataattatcttctgtgtgtatactaccaaaccgttattaataaacagaaaccgatacccttc 4203224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 7277270 - 7277368
Alignment:
Q  148 gtggctaattgattctaaatggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactgaggcgcgatgaccgattcta 246  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  7277270 gtggctgattgattctaaatggctgcggaaggaagagaaacggtgggtggaaaataagctgcgaaaggaagataacctgaagcgcgatgaccgattcta 7277368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 4203365 - 4203322
Alignment:
Q  205 gctgcggaaggaagataaactgaggcgcgatgaccgattctaaa 248  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  4203365 gctgcggaaggaagataaactgaagcgcgatgaccgattctaaa 4203322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 24361088 - 24361147
Alignment:
Q  168 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 227  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  24361088 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 24361147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 4203457 - 4203426
Alignment:
Q  11 atcatcaataattacatctcccatatcaaact 42  Q
    ||||||||||||||||||||||||||||||||    
T  4203457 atcatcaataattacatctcccatatcaaact 4203426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 7277196 - 7277231
Alignment:
Q  148 gtggctaattgattctaaatggctgcggaaggaaga 183  Q
    |||||| |||||||||||||||||||||||||||||    
T  7277196 gtggctgattgattctaaatggctgcggaaggaaga 7277231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 4203380 - 4203351
Alignment:
Q  154 aattgattctaaatggctgcggaaggaaga 183  Q
    ||||||||||||||||||||||||||||||    
T  4203380 aattgattctaaatggctgcggaaggaaga 4203351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 7277118 - 7277147
Alignment:
Q  13 catcaataattacatctcccatatcaaact 42  Q
    ||||||||||||||||||||||||||||||    
T  7277118 catcaataattacatctcccatatcaaact 7277147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 421507 - 421582
Alignment:
Q  168 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactgaggcgcgatgaccgatt 243  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| ||||||| | |||||||| ||||    
T  421507 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaagtgcgatgactgatt 421582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 404567 - 404511
Alignment:
Q  171 tgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 227  Q
    ||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  404567 tgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 404511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 6456004 - 6455955
Alignment:
Q  167 tggctgcggaaggaagagaaatgatggg--tggaaaataagctgcggaag 214  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6456004 tggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaag 6455955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 6760843 - 6760892
Alignment:
Q  167 tggctgcggaaggaagagaaatgatggg--tggaaaataagctgcggaag 214  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6760843 tggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaag 6760892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 421341 - 421370
Alignment:
Q  13 catcaataattacatctcccatatcaaact 42  Q
    ||||||||||||||||||||||||||||||    
T  421341 catcaataattacatctcccatatcaaact 421370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6456041 - 6456004
Alignment:
Q  116 gaacacgaatatggagctatagttccggcacggtggct 153  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  6456041 gaacacaaatatggagctataattccggcacggtggct 6456004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 24181074 - 24181015
Alignment:
Q  168 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 227  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  24181074 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 24181015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 24181240 - 24181211
Alignment:
Q  13 catcaataattacatctcccatatcaaact 42  Q
    ||||||||||||||||||||||||||||||    
T  24181240 catcaataattacatctcccatatcaaact 24181211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University