View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18846_high_9 (Length: 344)
Name: NF18846_high_9
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_high_9 |
 | |
|
| [»] chr7 (9 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 31216214 - 31215883
Alignment:
| Q |
13 |
aatattcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31216214 |
aatattcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaat |
31216115 |
T |
|
| Q |
113 |
gagaatcttgaatgtcggcaatatccatagagctttatgatgttacgatgcctgatttctgtcaaagcttgaatttcattttcaaaggctttgatattgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31216114 |
gagaatcttgaatgtcggcaatatccatagagctttatgatgttacgatgcctgatttctgtcaaagcttgaatttcattttcaaaggctttgatattgg |
31216015 |
T |
|
| Q |
213 |
acctttccccatctattctcgaatgaagtttcttcactgcaacaaccatatctgcagacaacttagccttgtaaacagatccttcccctcccactccaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31216014 |
acctttccccatctattctcgaatgaagtttcttcactgcaacaaccatatctgcagacaacttagccttgtaaacagatccttcccctcccactccaat |
31215915 |
T |
|
| Q |
313 |
gaggtattcatcatcaaaattgttggtagctt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31215914 |
gaggtattcatcatcaaaattgttggtagctt |
31215883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 31058977 - 31058837
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||| ||||||||||||||||||| ||||||||||| || |
|
|
| T |
31058977 |
attcaccctcttttcccaatcaaatgcaacggcttgtgtgtcattgtttagtatttga-tctaagcttccaccttccaagaacttgtaaaccaaaaacga |
31058879 |
T |
|
| Q |
115 |
gaatcttgaatgtcggcaatatccatagagctttatgatgtt |
156 |
Q |
| |
|
|||| | |||||| |||| |||||| || ||||||||||| |
|
|
| T |
31058878 |
gaatttagaatgtgagcaaaatccatgaagttttatgatgtt |
31058837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 31140780 - 31140640
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaatgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||| || |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31140780 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaagaacttgtaaaccaaaaatgag |
31140681 |
T |
|
| Q |
116 |
aatcttgaatgtcggcaatatccatagagctttatgatgtt |
156 |
Q |
| |
|
||| | |||||| |||| |||||| |||||||||||||| |
|
|
| T |
31140680 |
aatttagaatgtgagcaaaatccatgaagctttatgatgtt |
31140640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 31184501 - 31184379
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| || ||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
31184501 |
attcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttattatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatga |
31184403 |
T |
|
| Q |
115 |
gaatcttgaatgtcggcaatatcc |
138 |
Q |
| |
|
||| | |||||| |||||||||| |
|
|
| T |
31184402 |
gaacttagaatgttggcaatatcc |
31184379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 31103421 - 31103284
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| || ||| |||||||||||| |||||| ||||| |||||||| |
|
|
| T |
31103421 |
attcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaactaaaaatga |
31103323 |
T |
|
| Q |
115 |
gaatcttgaatgtcggcaatatccatagagctttatgat |
153 |
Q |
| |
|
||| | |||||| |||| |||||| ||||||||||| |
|
|
| T |
31103322 |
gaacttagaatgtgagcaaaatccatgaagctttatgat |
31103284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 31159612 - 31159555
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttga |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||| |
|
|
| T |
31159612 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttga |
31159555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 31241715 - 31241666
Alignment:
| Q |
16 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgttta |
65 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
31241715 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgttta |
31241666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 31140548 - 31140457
Alignment:
| Q |
242 |
ttcttcactgcaacaaccatatctgcagacaacttagccttgtaaacagatccttcccctcccactccaatgaggtattcatcatcaaaatt |
333 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| |||| |||||||||||| ||||| | ||| ||||||||||| |||| ||||||||||| |
|
|
| T |
31140548 |
ttcttcacagcaacaaccatacctgaagataactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaatt |
31140457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 31153563 - 31153472
Alignment:
| Q |
242 |
ttcttcactgcaacaaccatatctgcagacaacttagccttgtaaacagatccttcccctcccactccaatgaggtattcatcatcaaaatt |
333 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| |||| |||||||||||| ||||| | ||| ||||||||||| |||| ||||||||||| |
|
|
| T |
31153563 |
ttcttcacagcaacaaccatacctgaagataactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaatt |
31153472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University