View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_low_12 (Length: 325)

Name: NF18846_low_12
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_low_12
NF18846_low_12
[»] chr1 (1 HSPs)
chr1 (14-310)||(5107456-5107752)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 5107752 - 5107456
Alignment:
Q  14 aaatggaacaaaacatcgaaacaatggaaacgaggtttgatcttttacatggatcaatcacaacagcatcaagaagagtacaccctttacaatccttatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107752 aaatggaacaaaacatcgaaacaatggaaacgaggtttgatcttttacatggatcaatcacaacagcatcaagaagagtacaccctttacaatccttatc 5107653  T
Q  114 catgtcaagaaaagcacttgatacaagaatcaatagagcaatttctcctgctcttgcacttctcgaaactttcaaactcgctgagtctctccagaacaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107652 catgtcaagaaaagcacttgatacaagaatcaatagagcaatttctcctgctcttgcacttctcgaaactttcaaactcgctgagtctctccagaacaat 5107553  T
Q  214 ctccttaacctctcttcaaagctatcaacagaaaagactcatcaaaagaggctttcaaagcttctagattacatggattgtgttgatcagttaaatg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5107552 ctccttaacctctcttcaaagctatcaacagaaaagactcatcaaaagaggctttcaaagcttctagattacatggattgtgttgatcagttaaatg 5107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University