View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_18 (Length: 252)
Name: NF18846_low_18
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31140824 - 31141047
Alignment:
| Q |
1 |
atccagttgatagtaaatttactctttgaaattgttatctaagattaatgtgattaatgattttaagtttagagatcgtttccaaatttcattagnnnnn |
100 |
Q |
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| T |
31140824 |
atccagttgatagtaaatttactctttgaaattgttatctaagattaatgtgattaa---------gtttagagatcgtttccaaatttcattagttttt |
31140914 |
T |
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| Q |
101 |
nnggattatattaacaccaacatcaatctacaattttgtggactaaatttatttcactcttatttattttgttcttttatttgtggttgaaaatgttgaa |
200 |
Q |
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| T |
31140915 |
ttggattatattaacaccaacatcaatctacaattttgtggactaaatttatttcactcttatttattttgttcttttatttgtggttgaaaatgttgaa |
31141014 |
T |
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| Q |
201 |
gagtgtttggttaagaaaaacatgatgttcaag |
233 |
Q |
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| T |
31141015 |
gagtgtttggttaagaaaaacatgatgttcaag |
31141047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 31198235 - 31198029
Alignment:
| Q |
7 |
ttgatagtaaatttactctttgaaattgttatctaagattaatgtgattaatgattttaagtttagagatcgtttccaaatttcattagnnnnnnnggat |
106 |
Q |
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| T |
31198235 |
ttgataataaatttactctttgaaattgttatctaagactaatgtgattaatggttttaaatttagagatcatttccaaatttcattag-tttcatggat |
31198137 |
T |
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| Q |
107 |
tatattaacaccaacatcaatctacaattttgtggactaaatttatttcactcttatttattttgttc-ttttatttgtggttgaaaatgttgaagagtg |
205 |
Q |
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| T |
31198136 |
taaatt------aacatcaatctacaattttaaggcctaaagttattccactcttatttattttgttctttttatttgtggttgaaaacgttgaagagtg |
31198043 |
T |
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| Q |
206 |
tttggttaagaaaa |
219 |
Q |
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| T |
31198042 |
ttcggttaaaaaaa |
31198029 |
T |
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