View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_19 (Length: 247)
Name: NF18846_low_19
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 4145607 - 4145375
Alignment:
| Q |
16 |
ctaagcacatagaatacataccaataagcacccgaaaccactaggatatctacaaaaaa-cagcttgaattcagtagagtgaggaacacgtgctatagtt |
114 |
Q |
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| T |
4145607 |
ctaagcacatagaatacataccaataagcacccgaaaccactaggatatctacaaaaaaacagcttgaattcaatagagtgaggaacacgtgctatagtt |
4145508 |
T |
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| Q |
115 |
acttgacacttatgttccgatcgtttcagtgaaatcggtaaagaaggaattttgagccaacacttgaggatggggttcacgatgaaaatctaggaccatg |
214 |
Q |
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| T |
4145507 |
acttgacacttaagttccgatcgtttcagtgaaatcggtaaagaaggaattttgagccaacacttgaggatggggttcacgatgaaaatctaggaccatg |
4145408 |
T |
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| Q |
215 |
acaaagtagcaatattccatcacaagtatcgac |
247 |
Q |
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| T |
4145407 |
acaaagtagcaatattccatcacaagtatcgac |
4145375 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9841720 - 9841626
Alignment:
| Q |
19 |
agcacatagaatacataccaataagcacccgaaaccactaggatatctacaaaaaacagcttgaattcagtagagtgaggaacacgtgctatagt |
113 |
Q |
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| T |
9841720 |
agcacatagaaaacataccaacaagcacccgaaacctcaaggacatctataaggaaaagcttgaatttggaagtgcgaggaacacgtgctatagt |
9841626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 7256441 - 7256399
Alignment:
| Q |
154 |
aaagaaggaattttgagccaacacttgaggatggggttcacga |
196 |
Q |
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| T |
7256441 |
aaagaaggaattctaagccaacacttgaggatggggttcacga |
7256399 |
T |
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