View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_2 (Length: 592)
Name: NF18846_low_2
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 296 - 578
Target Start/End: Original strand, 41953839 - 41954121
Alignment:
| Q |
296 |
acagtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
395 |
Q |
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| T |
41953839 |
acagtaaaacatagcttcattccataaaacacataacattacaaagggctaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
41953938 |
T |
|
| Q |
396 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
41953939 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactatttgcagagaaatgtgaggacttataccaacaatcatatccaaataaccaatgc |
41954038 |
T |
|
| Q |
496 |
atcaacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcatttt |
578 |
Q |
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| T |
41954039 |
atcaacaatgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacggatcatttt |
41954121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 41953577 - 41953828
Alignment:
| Q |
21 |
aatgtgttagtttgggaagtaaaatagtttagtgttcatcagagaaaaataagtaaaacggtnnnnnnnntcccctaaaaatcgaatttgagtattattg |
120 |
Q |
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| T |
41953577 |
aatgtgttagtttgggaagtaaaatagtttagtgttcatcagagaaaaataagtaaaacggtaaaaaaattcccctaaaaatcgaatttgagtattattg |
41953676 |
T |
|
| Q |
121 |
gaacaatttgagttaaacgtaactcattaggtacttgaacttaatctacgagagagaacacaattagtctatgnnnnnnnnnngcaaattttggattgga |
220 |
Q |
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| T |
41953677 |
gaacaatttgagttaaacgtaactcattaggtacttgaacttaatctacgagagagaacacaattagtctatgaaaaaaaaaagcaaattttggattgga |
41953776 |
T |
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| Q |
221 |
atctcaacactttagagttgactttatagaataaggttcaacagttccaacc |
272 |
Q |
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| T |
41953777 |
atctcaacactttagagttgactttatagaataaggttcaacagttccaacc |
41953828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 299 - 567
Target Start/End: Complemental strand, 35707624 - 35707359
Alignment:
| Q |
299 |
gtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaatttt |
398 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| |||||||||||| | |
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| T |
35707624 |
gtaaaacatagcttcattccataaaacacataacattacaaagggctaatattaatattgaaaggg---cattctccaacaatttcaaagagtaaattct |
35707528 |
T |
|
| Q |
399 |
agagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatc |
498 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35707527 |
agagaggtggtctactaaatcatgatgtaaatcacacatattgtttgcagagaaatgtaaggacttaaaccaacaaccatatccaaataaccaatgcatc |
35707428 |
T |
|
| Q |
499 |
aacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagtta |
567 |
Q |
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| T |
35707427 |
aacattgtccatccgcagatattgacaaaggaaatgtgagaatccacagtctttctttctattcagtta |
35707359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 296 - 578
Target Start/End: Original strand, 34221938 - 34222220
Alignment:
| Q |
296 |
acagtaatacatagcttcat---tccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagta |
392 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| |||||||||||| | ||||||||| |||||| ||| |||||||| ||||||| |||||||| |
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| T |
34221938 |
acagtaaaacatagcttcatcattccataaaacacaaaacattacaaagagctaatgttaacattgaagggg---cattccccaacaattttaaagagta |
34222034 |
T |
|
| Q |
393 |
aattttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaa |
492 |
Q |
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|||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||| || |||||||||| |||||| ||||||||||||| || || |
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| T |
34222035 |
aattctagagaggtagtctactaaatcaagatgtaaattacacataaattttgcagagagatatgaggacttaaaccaactaccatatccaaataacgaa |
34222134 |
T |
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| Q |
493 |
tgcatcaacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcatttt |
578 |
Q |
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| T |
34222135 |
tgcatcaacattgtccatccactgatattgacaaaggaaatgtgagaatccacaatctttctttctattcaggtacggatcatttt |
34222220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 312 - 578
Target Start/End: Complemental strand, 3340614 - 3340351
Alignment:
| Q |
312 |
tcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaattttagagaggtggtct |
411 |
Q |
| |
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|||||||||||||||| |||| ||||||||| ||||||||| |||||| ||| |||| ||| ||||||| |||||||||||| ||||||||| |||| |
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| T |
3340614 |
tcattccataaaacactaaacaatacaaagggctaatgttaacattgaagggg---catttcccaacaattttaaagagtaaattctagagaggtagtct |
3340518 |
T |
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| Q |
412 |
actaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatc |
511 |
Q |
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||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
3340517 |
actaaatcaagatgtaaattacaaataaattttgcagagagatgtgaggacttaaatcaactaccatatccaaataaccaatgcatcaacattgtccatc |
3340418 |
T |
|
| Q |
512 |
aactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcatttt |
578 |
Q |
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| T |
3340417 |
cgctgatattgacaaaggaaatgtgagaatccacaatctttctttctatccagttacggatcatttt |
3340351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 578
Target Start/End: Complemental strand, 15009267 - 15009188
Alignment:
| Q |
499 |
aacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcatttt |
578 |
Q |
| |
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||||||||||||| |||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
15009267 |
aacactgtccatccgctgataatgacaaagtaattgtgagaatccacagttttttcttctatccagttacggatcatttt |
15009188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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