View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_20 (Length: 239)
Name: NF18846_low_20
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32714626 - 32714405
Alignment:
| Q |
1 |
aatagaaataaaatgaaaaaactttaatttattaggcacatacatagaaagcggttactgtgccagctgaatcaccaggaaccatctttatgttcatact |
100 |
Q |
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| T |
32714626 |
aatagaaataaaatgaaaaaactttaatttgttaggcacatacatagaaagcggttaccgtgccagctgaatcaccaggaaccatctttatgttcatact |
32714527 |
T |
|
| Q |
101 |
gaaatgaccaaacaagtatgaaccttttgattgaaaaccagtacctgttaaaaaagtagttagaaaaatgaacaatgtagtacaaaaactaagggcatgg |
200 |
Q |
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| T |
32714526 |
gaaatgaccaaacaagtatgaaccttttgattgaaaaccagtacctgttaaaaaagtagttagaaaaatgaacaatgtagtacaaaaaccaagggcatgg |
32714427 |
T |
|
| Q |
201 |
attgacatattatagcatatgt |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
32714426 |
attgacataatatagcatatgt |
32714405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 32717700 - 32717556
Alignment:
| Q |
38 |
acatacatagaaagcggttactgtgccagctgaatcaccaggaaccatctttatgttcatactgaaatgaccaaacaagtatgaaccttttgattgaaaa |
137 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32717700 |
acatacatagaaagcagtgactgtgccagctgaatcaccaggaaccatcttaatgttcatactgaaatgaccaaacaagtatgaacctttggactgaaaa |
32717601 |
T |
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| Q |
138 |
ccagtacctgttaaaaaagtagttagaaaaatgaacaatgtagta |
182 |
Q |
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| T |
32717600 |
ccagtacctatacaaaaagaagttagaaaaatgaccaatatagta |
32717556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 32708533 - 32708428
Alignment:
| Q |
41 |
tacatagaaagcggttactgtgccagctgaatcaccaggaaccatctttatgttcatactgaaatgaccaaacaagtatgaaccttttgattgaaaacca |
140 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||| |||||| |
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| T |
32708533 |
tacataaaaagcggtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaacca |
32708434 |
T |
|
| Q |
141 |
gtacct |
146 |
Q |
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|||||| |
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| T |
32708433 |
gtacct |
32708428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 10380885 - 10380994
Alignment:
| Q |
41 |
tacatagaaagcggttactgtgccagctgaatcaccaggaaccatctttatgttcatactgaaatgaccaaacaagtatgaaccttttgattgaaaacca |
140 |
Q |
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| T |
10380885 |
tacatagaaagcagtgactgttccagctgaatcaccagctaccattcttatgtacatactaaagtgaccaaataaataagaccctttggattgaaagcca |
10380984 |
T |
|
| Q |
141 |
gtacctgtta |
150 |
Q |
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|||||||||| |
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| T |
10380985 |
gtacctgtta |
10380994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 10409959 - 10409847
Alignment:
| Q |
41 |
tacatagaaagcggttactgtgccagctgaatcaccaggaaccatctttatgttcatactgaaatgaccaaacaagtatgaaccttttgattgaaaacca |
140 |
Q |
| |
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|||||||||||| || || || ||||||||||||||||| ||||| |||||| |||||| || |||||||| || || || ||||| |||||||| || |
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| T |
10409959 |
tacatagaaagcagtgacagttccagctgaatcaccaggtaccatttttatgaacatactaaagtgaccaaataaataagaccctttggattgaaagccg |
10409860 |
T |
|
| Q |
141 |
gtacctgttaaaa |
153 |
Q |
| |
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||||||||||||| |
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|
| T |
10409859 |
gtacctgttaaaa |
10409847 |
T |
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