View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_low_21 (Length: 232)

Name: NF18846_low_21
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_low_21
NF18846_low_21
[»] chr3 (6 HSPs)
chr3 (10-213)||(2506640-2506843)
chr3 (11-70)||(3400506-3400565)
chr3 (10-88)||(9507762-9507840)
chr3 (10-88)||(9515737-9515815)
chr3 (11-88)||(3259469-3259546)
chr3 (17-88)||(797217-797288)
[»] scaffold0149 (2 HSPs)
scaffold0149 (143-203)||(25846-25906)
scaffold0149 (16-88)||(25949-26020)
[»] chr8 (3 HSPs)
chr8 (22-88)||(22931231-22931297)
chr8 (149-203)||(22931361-22931415)
chr8 (10-88)||(24061436-24061514)
[»] scaffold0888 (1 HSPs)
scaffold0888 (11-69)||(2933-2991)
[»] scaffold2125 (1 HSPs)
scaffold2125 (35-88)||(629-682)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 2506640 - 2506843
Alignment:
Q  10 aagaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaaaattcatggcacaaagtattt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506640 aagaaaataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaaaattcatggcacaaagtattt 2506739  T
Q  110 tctccaccctatcggaaggcatttacacattcgacgcacacacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagtaacacat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2506740 tctccaccctatcggaaggcatttacacattcgacgcacacacctcggttccataccgggggggcacatatgtggtggacaatgagaatcagtaacacat 2506839  T
Q  210 agat 213  Q
    ||||    
T  2506840 agat 2506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 3400506 - 3400565
Alignment:
Q  11 agaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttg 70  Q
    |||| ||||||||||||||| | ||||||||| ||||||||| ||||||||| |||||||    
T  3400506 agaaaataactaaatgacagctaatggaatatcgtagcagagcatttgtgtactatcttg 3400565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9507762 - 9507840
Alignment:
Q  10 aagaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||| ||||||||||||||| || ||||| ||| |||||||| ||||||||  ||| |||||||| | ||||||||||    
T  9507762 aagaaaataactaaatgacagcttgtggaacattatagcagagcatttgtgttctattttgggtctgaaactaaatgaa 9507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9515737 - 9515815
Alignment:
Q  10 aagaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||| ||||||||||||||| || ||||| ||| |||||||| ||||||||  ||| |||||||| | ||||||||||    
T  9515737 aagaaaataactaaatgacagcttgtggaacattatagcagagcatttgtgttctattttgggtctgaaactaaatgaa 9515815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 3259469 - 3259546
Alignment:
Q  11 agaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    |||| |||||||||||||||    ||||||||||||| |||  ||||||||||||||||||||||  || ||||||||    
T  3259469 agaaaataactaaatgacagcccgtggaatattgtagtagatcatttgtgtattatcttgggtctggcaataaatgaa 3259546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 797288 - 797217
Alignment:
Q  17 taactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    |||| ||||||||  || || ||| ||||||||||||||||||||| | |||||| ||| ||||||||||||    
T  797288 taacgaaatgacaccttgtgaaatgttgtagcagagtatttgtgtactctcttggctctgacactaaatgaa 797217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 25906 - 25846
Alignment:
Q  143 acgcacacacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagta 203  Q
    |||||||||| | |||||||| || ||||||||||||| ||||||||||||||||||||||    
T  25906 acgcacacactttggttccattccaggggggcacatatttggtggacaatcagaatcagta 25846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 26020 - 25949
Alignment:
Q  16 ataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||||||||||||| || || ||| ||||||||||| |||| |||| | |||||||||| ||||||||||||    
T  26020 ataactaaatgacagcttgtg-aatgttgtagcagagcatttatgtactctcttgggtctgacactaaatgaa 25949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 22931231 - 22931297
Alignment:
Q  22 aaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||||||| || ||||| |||||||||||| ||||||||  |||| ||||||||| ||||||||||    
T  22931231 aaatgacagcttgtggaacattgtagcagagcatttgtgtgctatcgtgggtctaaaactaaatgaa 22931297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 22931361 - 22931415
Alignment:
Q  149 acacctcggttccatacccggggggcacatatgtggtggacaatcagaatcagta 203  Q
    |||||||||||||||| | |||| |||||||| | ||||||||||||||||||||    
T  22931361 acacctcggttccatatcaggggtgcacatattttgtggacaatcagaatcagta 22931415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 24061514 - 24061436
Alignment:
Q  10 aagaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||| ||||||||||||| | || || ||||||||||||||| || |||| | | |||||||||| |||| |||||||    
T  24061514 aagaaaataactaaatgacggcttgtgcaatattgtagcagagcatatgtggactctcttgggtctgacaccaaatgaa 24061436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2991 - 2933
Alignment:
Q  11 agaatataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatctt 69  Q
    |||| |||||||||  |||| ||||||||||||| ||||||| ||||||||| ||||||    
T  2991 agaaaataactaaacaacagcttatggaatattgcagcagagcatttgtgtactatctt 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2125 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 682 - 629
Alignment:
Q  35 tggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa 88  Q
    ||||||||||||| ||| ||||||||||  |||||||||||| ||| |||||||    
T  682 tggaatattgtagaagattatttgtgtacaatcttgggtctagcaccaaatgaa 629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University