View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_23 (Length: 228)
Name: NF18846_low_23
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4145053 - 4145280
Alignment:
| Q |
1 |
aaattcctatagtagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctg |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145053 |
aaattcctatagtggtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctg |
4145152 |
T |
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| Q |
101 |
cttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtc |
200 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145153 |
cttaactctgcaaggtatgtttgcaaatcttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtc |
4145252 |
T |
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| Q |
201 |
tatatgttgaaaattgcaagcatcaaaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4145253 |
tatatgttgaaaattgcaagcatcaaaa |
4145280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 2327232 - 2327023
Alignment:
| Q |
9 |
atagtagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactc |
108 |
Q |
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| T |
2327232 |
atagtactaagagttgtaaaatgatttcaaagttgcttctacttgaagacttgaggtttcatatctttacttttgttcctcttaattgcctgcttaactc |
2327133 |
T |
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| Q |
109 |
tgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgtt |
208 |
Q |
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| T |
2327132 |
tgcaaggtatgtaaacaaactgtgggctgctactattggcagctcccattttgctgaagcatacgaacgccatgcacattctaaacttggtctttatgtt |
2327033 |
T |
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| Q |
209 |
gaaaattgca |
218 |
Q |
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|||||||||| |
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| T |
2327032 |
gaaaattgca |
2327023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 39571552 - 39571693
Alignment:
| Q |
13 |
tagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgca |
112 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||| ||||||| | ||| |||| | || |||||||| || |
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| T |
39571552 |
tagtaagagttgtaaagtgatttcaaagttgctgctccctgaagatttattgtttgatatctttagtttggttcctcttaatagcctaattaactctaca |
39571651 |
T |
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| Q |
113 |
aggtatgtttacaaaccttgggctactactattcgcagctcc |
154 |
Q |
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| T |
39571652 |
agatatgtttgcaaatcttgggcggctactattcgcagctcc |
39571693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 9841190 - 9841392
Alignment:
| Q |
16 |
taagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaagg |
115 |
Q |
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|||||||||||||||||||||||||||||| | | |||||||||| ||||| || |||||| ||| | ||| ||| || || ||||||||||||| |
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| T |
9841190 |
taagagttgtaaagtgatttcaaagttgttgcttcttgaagacttgttgtttcatgtccttactttggttcctcttacctgcttgtttaactctgcaaga |
9841289 |
T |
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| Q |
116 |
tatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgttgaaaatt |
215 |
Q |
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||||||| ||||||||||||| |||||||| ||||||| ||||| ||||| | | || ||| ||| ||| || ||||||||||||||| |||||| |
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| T |
9841290 |
tatgtttgcaaaccttgggctgctactattgcaagctccccttttgctgaagcatacgaacgccgtccacgttctaagcctggtctatatgttcaaaatt |
9841389 |
T |
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| Q |
216 |
gca |
218 |
Q |
| |
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||| |
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| T |
9841390 |
gca |
9841392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 9846270 - 9846467
Alignment:
| Q |
17 |
aagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaaggt |
116 |
Q |
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||||||||| |||||||||||| | |||| | |||||| |||||||||||||||||||||| || | | | |||| || ||| |||| |||||||||| |
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| T |
9846270 |
aagagttgtgaagtgatttcaacgctgttgcttcctgaacacttggtgtttgatatccttaggttggttcatcttaactgcctgattaattctgcaaggt |
9846369 |
T |
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| Q |
117 |
atgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgttgaaaat |
214 |
Q |
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| T |
9846370 |
atgtttgtaaagcttgggctgctactattgccagctccctttttgttgaaatgtgcgaaagccgtgcacgttctaaacctggtctttatgttgaaaat |
9846467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 9902143 - 9902281
Alignment:
| Q |
16 |
taagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaagg |
115 |
Q |
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|||||||||| |||| ||||||||| |||| | |||||||||||| ||||| ||||||||| ||| | ||| || | |||||| | |||||||||||| |
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| T |
9902143 |
taagagttgtgaagtaatttcaaaggtgttgcttcctgaagacttgatgttttatatccttactttggttcctcttgattgtctgatcaactctgcaagg |
9902242 |
T |
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| Q |
116 |
tatgtttacaaaccttgggctactactattcgcagctcc |
154 |
Q |
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||||||| ||||||||||||| ||| |||| ||||||| |
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| T |
9902243 |
tatgtttgcaaaccttgggctgctattattgccagctcc |
9902281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 7256125 - 7256194
Alignment:
| Q |
101 |
cttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgt |
170 |
Q |
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| T |
7256125 |
cttaactctgcgaggtatgtttgcaaaccttgggctgctacaattggcagctcccattttgctgaagcgt |
7256194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 46445273 - 46445330
Alignment:
| Q |
98 |
ctgcttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccc |
155 |
Q |
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||||||||||||||||||| ||||| || | ||||||||||| ||||| |||||||| |
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| T |
46445273 |
ctgcttaactctgcaaggtttgtttgcatatcttgggctactgttattcacagctccc |
46445330 |
T |
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