View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_low_24 (Length: 224)

Name: NF18846_low_24
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_low_24
NF18846_low_24
[»] chr7 (1 HSPs)
chr7 (17-209)||(14564187-14564379)
[»] chr6 (1 HSPs)
chr6 (17-209)||(19775282-19775473)
[»] chr5 (2 HSPs)
chr5 (21-93)||(150136-150208)
chr5 (143-210)||(150020-150087)
[»] chr2 (3 HSPs)
chr2 (24-209)||(22070804-22070988)
chr2 (127-206)||(25807797-25807876)
chr2 (18-54)||(25807950-25807986)
[»] scaffold0003 (2 HSPs)
scaffold0003 (125-209)||(123329-123413)
scaffold0003 (27-91)||(123449-123513)
[»] scaffold0028 (1 HSPs)
scaffold0028 (127-209)||(114867-114949)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 14564187 - 14564379
Alignment:
Q  17 attaattatatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataacgagtacacctgacaaaaagtat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14564187 attaattatatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataacgagtacacctgacaaaaagtat 14564286  T
Q  117 gataccattttttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14564287 gataccattttttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 14564379  T

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Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 19775282 - 19775473
Alignment:
Q  17 attaattatatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataacgagtacacctgacaaaaagtat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |    
T  19775282 attaattatatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataatgagcacacctgacaaaaagtgt 19775381  T
Q  117 gataccattttttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 209  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19775382 gatacca-tttttgggggtaaagttgttgtgtttggcggtgattttagacaaatactgccagttattccaagaggagatagatatgatattgt 19775473  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 150208 - 150136
Alignment:
Q  21 attatatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataa 93  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||    
T  150208 attatttgggatgaagcaccaatggcacataaatatacctttgagtgtttggatagaacacttagagatataa 150136  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 150087 - 150020
Alignment:
Q  143 ttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgtg 210  Q
    |||| ||||| || |||||||||||||| || || ||| ||||||||||| ||||||| |||||||||    
T  150087 ttgtctttggaggagattttagacaaattcttccggttgttccaagaggaaatagatcagatattgtg 150020  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 22070988 - 22070804
Alignment:
Q  24 atatgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatataacgagtacacctgacaaaaagtatgatacca 123  Q
    |||||||| |||||||||||| | |||| ||| ||||| ||||||||||| ||||||||||| ||||||| | ||    ||||||| |||| ||| ||||    
T  22070988 atatgggacgaagcaccaatgtcccatagatatactttcgagtgtttggacagaacacttaaggatataatgggtgatgctgacaacaagtgtgaaacca 22070889  T
Q  124 ttttttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 209  Q
     |||||||||| || ||||| || |||||||| |||||| |||||||  | |||||||| || ||||| ||| | |||||||||||    
T  22070888 -tttttggggggaaggttgtagtttttggtggggattttcgacaaattttaccagttatacctagaggtgatcggtctgatattgt 22070804  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 25807876 - 25807797
Alignment:
Q  127 tttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatat 206  Q
    ||||| || ||| |||| || ||||| |||||||||||||||||||| |||||  | ||| ||||| |||||||||||||    
T  25807876 tttggcggaaaaattgtagtatttggaggtgattttagacaaatactaccagtagtgccaggaggaaatagatctgatat 25807797  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 25807986 - 25807950
Alignment:
Q  18 ttaattatatgggatgaagcaccaatggcacataaat 54  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  25807986 ttaattatatgggatgaggcaccaatggcgcataaat 25807950  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 123413 - 123329
Alignment:
Q  125 tttttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 209  Q
    |||||||||| ||||||||||| ||||| || || ||||||||||| || || |||||||||||||| ||  ||||||| |||||    
T  123413 tttttgggggaaaagttgttgtttttggaggagactttagacaaatcctacctgttattccaagaggtgaccgatctgacattgt 123329  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 123513 - 123449
Alignment:
Q  27 tgggatgaagcaccaatggcacataaatacacttttgagtgtttggatagaacacttaaagatat 91  Q
    |||||||| ||||| |||| ||||| ||| |||||||||||  | ||||||||||||||||||||    
T  123513 tgggatgaggcacccatggaacatagatatacttttgagtgacttgatagaacacttaaagatat 123449  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 114949 - 114867
Alignment:
Q  127 tttgggggtaaagttgttgtgtttggtggtgattttagacaaatactgccagttattccaagaggagatagatctgatattgt 209  Q
    ||||| || ||||||||||| ||||||||||||||| |||| ||||| |  ||  ||||||||| | |||||||||| |||||    
T  114949 tttggtggcaaagttgttgtttttggtggtgattttcgacagatactacttgtggttccaagagcaaatagatctgaaattgt 114867  T

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