View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_25 (Length: 218)
Name: NF18846_low_25
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 34255352 - 34255534
Alignment:
| Q |
24 |
acactttcggtgtatactaattaaactaatttttcttatggatatataaaatgtatgaatcatcatgcacctctttttccaattctatttggcagatatg |
123 |
Q |
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| T |
34255352 |
acactttcggtgtatactaattaaactaatttttcttatggatatataaaatgtatgaatcatcatgcacctctttttccaattctatttggcagatatg |
34255451 |
T |
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| Q |
124 |
atgtccgaaaaacatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattcttcg |
206 |
Q |
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| T |
34255452 |
atgtccgaaaaacatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcg |
34255534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 41551644 - 41551745
Alignment:
| Q |
100 |
ttccaattctatttggcagatatgatgtccgaaaaacatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtata |
199 |
Q |
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| T |
41551644 |
ttccaattctatttggcagtttcaatgtccgagaaacatctctagacttgtacctcttttacttggaggtcacaagaagaggaggttatcaccaggtata |
41551743 |
T |
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| Q |
200 |
tt |
201 |
Q |
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| T |
41551744 |
tt |
41551745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 37556731 - 37556785
Alignment:
| Q |
144 |
gacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtat |
198 |
Q |
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| T |
37556731 |
gacttgtacctcttttacttggaagtcaccagaagaggaggttttcaccaggtat |
37556785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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