View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_3 (Length: 558)
Name: NF18846_low_3
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 181 - 542
Target Start/End: Complemental strand, 17380309 - 17379946
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
280 |
Q |
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| T |
17380309 |
taaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
17380210 |
T |
|
| Q |
281 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctatattttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatattc |
380 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17380209 |
tatgtcgtgattcgaaaatcagcttccaatggttcatagtctatattttaaatgatgttagatgagatgaaacacaatctagaacatgatatggatattc |
17380110 |
T |
|
| Q |
381 |
ccaatgctctatgttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactcagaagataaga--gagtnnnnnnncagtataa |
478 |
Q |
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| T |
17380109 |
ccaatgctctaagttgttgagttcttttcttgtcgatcaaagacaaagtaggatttgtaaaaatactcagaagataagatcgagtaaaaaaacagcataa |
17380010 |
T |
|
| Q |
479 |
actacccattgatgtgtcaaactaatctttataaagttaagagtttgaagtttgggacaatctg |
542 |
Q |
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| T |
17380009 |
actacccattgatgtgtcaaacaaatctttataaagttaagagtttgaagtttgggccaatctg |
17379946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 17380587 - 17380467
Alignment:
| Q |
9 |
gaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattc |
108 |
Q |
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| T |
17380587 |
gaagaatatcagtaatagtataacagaaaaattaagtcatgtagaaatattttgtgcagac----cacacttcaatccaattaagacctaacaacaattc |
17380492 |
T |
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| Q |
109 |
aaaattcaaaagatattgacacaag |
133 |
Q |
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| T |
17380491 |
aaaattcaaaagatattgacacaag |
17380467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 181 - 406
Target Start/End: Complemental strand, 17392799 - 17392578
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
280 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||| |||||||||| || |||||||||||||| |
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| T |
17392799 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatgatgaatggtcataacttgtaaaagtc----tcgcattctgcaaaata |
17392706 |
T |
|
| Q |
281 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
379 |
Q |
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| T |
17392705 |
tatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacatgatctggatatt |
17392606 |
T |
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| Q |
380 |
cccaatgctctat-gttgttgagttctt |
406 |
Q |
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| T |
17392605 |
cccaatgctctatggttgttgaattctt |
17392578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 181 - 448
Target Start/End: Complemental strand, 17384088 - 17383826
Alignment:
| Q |
181 |
taaattttctaaaaattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcataatctgtaaaagtcacaatcacattctgcaaaata |
280 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||| ||||||| || |||||||||||||| |
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| T |
17384088 |
taaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcat-atctgcaaaagtc----tcgcattctgcaaaata |
17383996 |
T |
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| Q |
281 |
tatgtcttgatttgaaaatcagcttccaatggttcatagtctat-attttaaatgctgttagatgagatgaaacacaatctagaacatgataaggatatt |
379 |
Q |
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||||| || | |||||||||||||| | | |||||||| || | || |||| |||||||| ||| |||||||| ||| ||||||||| ||||||| |
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| T |
17383995 |
tatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaacatgatctggatatt |
17383896 |
T |
|
| Q |
380 |
cccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactc |
448 |
Q |
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|||||||||||||| ||| ||| |||| | |||| ||| |||||||||||||| ||||||||||||| |
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| T |
17383895 |
cccaatgctctatgcttgctgaattctccgcctgtcaatccgagacaaaataggatatgtaaaaatactc |
17383826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 17389636 - 17389519
Alignment:
| Q |
9 |
gaagaatatcagtaatagtataacagaaaaactaagtcatgtagaaatattttgtgcagaccatgcacacgtcaatccaattacgacctaacaacaattc |
108 |
Q |
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|
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| T |
17389636 |
gaagaatatcaataatagtataacagaaaaaataagtcatgtagaaa-attatgtgcacacct---acaagtaaatccaattatgacctaacaacaattc |
17389541 |
T |
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| Q |
109 |
aaaattcaaaagatattgacac |
130 |
Q |
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|||||||||||||||||||||| |
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| T |
17389540 |
aaaattcaaaagatattgacac |
17389519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 449
Target Start/End: Complemental strand, 17377571 - 17377460
Alignment:
| Q |
336 |
tgttagatgagatgaaacacaatctagaacatgataaggatattcccaatgctctatg-ttgttgagttcttttcttgtcgatcaaagacaaaataggat |
434 |
Q |
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| T |
17377571 |
tgttagatgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattattcgcctgtcgatccgagacaaaataggat |
17377475 |
T |
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| Q |
435 |
ttgtaaaaatactca |
449 |
Q |
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| T |
17377474 |
ttgtaaaaatactca |
17377460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 267 - 449
Target Start/End: Original strand, 26052744 - 26052928
Alignment:
| Q |
267 |
cattctgcaaaatatatgtcttgatttgaaaatcagcttccaatggttcatagtctatatttt-aaatgctgttagatgagatgaaacacaatctagaac |
365 |
Q |
| |
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||||||||||||||||||| || | ||| ||||| ||| | | ||||||||||||| || |||| ||||||||||||||||||||| ||| |||| |
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| T |
26052744 |
cattctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctggaac |
26052843 |
T |
|
| Q |
366 |
atgataaggatattcccaatgctctat-gttgttgagttcttttcttgtcgatcaaagacaaaataggatttgtaaaaatactca |
449 |
Q |
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| T |
26052844 |
atgatctggatattcccaatgctctatggttgttgaatacttctcctgtcaatccgatacaaaataggatttgtaaaaatactca |
26052928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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