View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_6 (Length: 463)
Name: NF18846_low_6
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 205 - 443
Target Start/End: Complemental strand, 3427088 - 3426850
Alignment:
| Q |
205 |
ttaatatttttcattcgattaaatacatgaataaattaaagtaaaatgagtcccactacccttacatgtttgtccgtgtgatggtgtgatgctcatgtga |
304 |
Q |
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| T |
3427088 |
ttaatatttttcattcgattaaatacatgaataaattaaagtaaaatgagtcccactacccttacatgtttgtccgtgtgatggtgtgatgctcatgtga |
3426989 |
T |
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| Q |
305 |
gcaaggtttccgtcagatatatcattatcataaaaatgagaagtgttatgaacactctcttttaaatacgatatctaacacttttttattggataaaatt |
404 |
Q |
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| T |
3426988 |
gcaaggtttcggtcagatatatcattattataaaaatgagaagtgttatgaacactctcttttaaatacgatatctaacactcttttattggataaaatt |
3426889 |
T |
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| Q |
405 |
aatttaaatctcacactttttaaatggtgcctacataga |
443 |
Q |
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| T |
3426888 |
aatttaaatctcacactttttaaatggtgcttacataga |
3426850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 3427342 - 3427154
Alignment:
| Q |
13 |
aatatcatcttctttatacattgtttgtgtgagcatgcatctgtttgaacaaattattaagttaactgacttacatctctcattcacacacaactcaatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427342 |
aatatcatcttctttatacattgtttgtgtgagcatgcatctgtttgaacacattattaagttaactgacttacatctctcattcacacacaactcaatc |
3427243 |
T |
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| Q |
113 |
taatttattaagttcaacaattttaaccctaaactcctctggtgcaaactatttgaactaaaaatctgaacaaccatgtcaatagcaaa |
201 |
Q |
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| T |
3427242 |
taatttattaagttcaacaattttaaccctaaactcctctcgtgcaaactatttgaactaaaaatctgaacaaccatgtcaatagcaaa |
3427154 |
T |
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