View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18846_low_7 (Length: 449)
Name: NF18846_low_7
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 83 - 434
Target Start/End: Original strand, 16694825 - 16695175
Alignment:
| Q |
83 |
caacataatttattcttaacaacacatacaaattaagttcaacaaagaaattattttgaaggaaataaattaacaaacttttaacaaaaaacattgtaag |
182 |
Q |
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| T |
16694825 |
caacataatttattct-aacaacacatacaaattaagttcaacaaagaaattattttgaaggaaataaattaacaaacttttaacaaaaaacattgtaag |
16694923 |
T |
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| Q |
183 |
ttgtaacaatttaagtttgactttgtaagttgaagagataaaataacatggggtggagtcatatcgacccaaaccaggagtaaacaaaaattttatgctg |
282 |
Q |
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| T |
16694924 |
ttgtaacaatttaagtttgactttgtaagttgaagagataaaataacatggggtagagtcatatcgacccaaaccaggagtaaacaaaaattgtatgctg |
16695023 |
T |
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| Q |
283 |
caaaataagtgcttcaagttcaaatccaattcaaatttattcctttcatctttatttgtagcattccaaaattcaaaagcttgcttatcttatgtcctct |
382 |
Q |
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| T |
16695024 |
caaaataagtgcttcaagttcaaatccaattcaaatttattcctttcatctttatttgtagcattccaaaattcaaaagcttgcttatcttatgtcctct |
16695123 |
T |
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| Q |
383 |
attttcacaaaggtcttgtatctataacgacaagcacaaaacaagaaccaac |
434 |
Q |
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| T |
16695124 |
attttcacaaaggtcttgtatctataacgacaagcacaaaacaagaaccaac |
16695175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 16694516 - 16694596
Alignment:
| Q |
1 |
aagaacttttgagaaatgaatgggtccatgtagaggttttgtttaagcatcaaatgaagaaaacactccttatagaaagtg |
81 |
Q |
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| T |
16694516 |
aagaacttttgagaaatgaatgggtccatgtagaggttttgtttaagcatcaaatgaagaaaacactccttatagaaagtg |
16694596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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