View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18846_low_8 (Length: 445)
Name: NF18846_low_8
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18846_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 2041366 - 2040947
Alignment:
| Q |
12 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2041366 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataa |
2041267 |
T |
|
| Q |
112 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2041266 |
tgtaaaataccttggagatgttagtcatgttgatcatgatatgcttgagagaatcttgcctcactgcacacttgaccagttgatgcatattgagaagtcc |
2041167 |
T |
|
| Q |
212 |
actcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2041166 |
actcaagggatggatttgagccctataacagatcaattgtggagaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaaga |
2041067 |
T |
|
| Q |
312 |
tgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgca |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041066 |
tgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaagagtggctcagactgagaatgaagcagttgatcgactcgcgca |
2040967 |
T |
|
| Q |
412 |
acgctacaaggaagaagatg |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2040966 |
acgctacaaggaagaagatg |
2040947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 44 - 431
Target Start/End: Original strand, 1357444 - 1357831
Alignment:
| Q |
44 |
cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
143 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
1357543 |
T |
|
| Q |
144 |
atcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
243 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357544 |
atcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
1357643 |
T |
|
| Q |
244 |
tcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttg |
343 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1357644 |
taaattgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttg |
1357743 |
T |
|
| Q |
344 |
cagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357744 |
cagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatg |
1357831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 1352291 - 1352697
Alignment:
| Q |
12 |
catcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1352291 |
catcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa |
1352390 |
T |
|
| Q |
112 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
1352391 |
tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagaca |
1352490 |
T |
|
| Q |
212 |
actcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaaga |
311 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1352491 |
aataaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatgaagtagttaagaaga |
1352590 |
T |
|
| Q |
312 |
tgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgca |
411 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| || | |
|
|
| T |
1352591 |
tgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaa |
1352677 |
T |
|
| Q |
412 |
acgctacaaggaagaagatg |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1352678 |
acgctacaaggaagaagatg |
1352697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 98 - 431
Target Start/End: Original strand, 1364328 - 1364648
Alignment:
| Q |
98 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
1364328 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgc |
1364427 |
T |
|
| Q |
198 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatga |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1364428 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatga |
1364527 |
T |
|
| Q |
298 |
agtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagtt |
397 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
1364528 |
agtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagtt |
1364614 |
T |
|
| Q |
398 |
gatcgactcgcgcaacgctacaaggaagaagatg |
431 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
1364615 |
gatcgactcacgcaacgctacaaggaagaagatg |
1364648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 29 - 431
Target Start/End: Original strand, 36717341 - 36717743
Alignment:
| Q |
29 |
ttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717341 |
ttgtttcaaaggaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggag |
36717440 |
T |
|
| Q |
129 |
atgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggattt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||| |
|
|
| T |
36717441 |
atgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggattt |
36717540 |
T |
|
| Q |
229 |
gagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtt |
328 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36717541 |
gagccctataactgataaattgtggaaaaaattctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtt |
36717640 |
T |
|
| Q |
329 |
tcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaag |
428 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717641 |
tcattcacttggttgcagctgtatgaggctaaggtaaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaag |
36717740 |
T |
|
| Q |
429 |
atg |
431 |
Q |
| |
|
||| |
|
|
| T |
36717741 |
atg |
36717743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 50 - 344
Target Start/End: Complemental strand, 24620630 - 24620337
Alignment:
| Q |
50 |
atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
149 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
24620531 |
T |
|
| Q |
150 |
atatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaatt |
249 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | | ||||||||||||||| ||| | || ||||||||||||||| |||| | || || | |
|
|
| T |
24620530 |
atatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatatatcgaataaact |
24620432 |
T |
|
| Q |
250 |
gtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgc |
344 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||| |||||| |||||||| |||||| | ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
24620431 |
gtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 18180026 - 18179888
Alignment:
| Q |
218 |
gggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaag |
317 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| |||||| |||||| | ||| || ||||| || |
|
|
| T |
18180026 |
gggatggatttgagcccggtaacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacag |
18179927 |
T |
|
| Q |
318 |
aaaaaagagtttcgttcacttggttgcagctgtatgagg |
356 |
Q |
| |
|
|||||||||| || |||| ||||||||| ||||||||| |
|
|
| T |
18179926 |
aaaaaagagtgtcattcagatggttgcagttgtatgagg |
18179888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 18180249 - 18180119
Alignment:
| Q |
78 |
tggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactg |
177 |
Q |
| |
|
||||||||||||||||| | | |||||| |||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |
|
|
| T |
18180249 |
tggttgatctttgtgttcaaacagctatagataatttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttgccacactg |
18180150 |
T |
|
| Q |
178 |
cacacttgatcagttgatgcatattgagaag |
208 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| |
|
|
| T |
18180149 |
cacacttgaccagttgacgcatatcgagaag |
18180119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 18179711 - 18179644
Alignment:
| Q |
354 |
aggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaag |
421 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
18179711 |
aggctaagggaaaagaagtggctcaggctgagaatgaagcaattgatcgactcagggaacgctacaag |
18179644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 24619969 - 24619879
Alignment:
| Q |
341 |
ttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatg |
431 |
Q |
| |
|
||||||||| || | |||||||| |||||| | |||||| | | ||||||||||||||||||| | ||||| |||| ||||||||||||| |
|
|
| T |
24619969 |
ttgcagctgaataaagctaaggtaaaaaaaatagctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatg |
24619879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University