View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18846_low_9 (Length: 380)

Name: NF18846_low_9
Description: NF18846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18846_low_9
NF18846_low_9
[»] chr2 (4 HSPs)
chr2 (281-367)||(15017374-15017460)
chr2 (281-360)||(5325464-5325543)
chr2 (285-367)||(10978363-10978446)
chr2 (281-356)||(22725790-22725865)
[»] chr6 (6 HSPs)
chr6 (285-367)||(5086383-5086465)
chr6 (285-367)||(33019679-33019761)
chr6 (286-367)||(503892-503973)
chr6 (285-367)||(33639616-33639698)
chr6 (285-358)||(8263953-8264026)
chr6 (285-367)||(19227212-19227294)
[»] chr7 (7 HSPs)
chr7 (285-360)||(6970710-6970785)
chr7 (297-367)||(21439281-21439351)
chr7 (285-367)||(25923769-25923851)
chr7 (285-356)||(17804655-17804726)
chr7 (285-367)||(34518964-34519046)
chr7 (285-367)||(45987748-45987830)
chr7 (285-325)||(33796727-33796767)
[»] chr5 (3 HSPs)
chr5 (281-344)||(11575049-11575112)
chr5 (285-367)||(5415505-5415587)
chr5 (285-359)||(22095610-22095684)
[»] chr4 (11 HSPs)
chr4 (281-367)||(19114134-19114220)
chr4 (281-367)||(30310144-30310230)
chr4 (292-367)||(48031509-48031584)
chr4 (285-367)||(7473105-7473187)
chr4 (285-367)||(8934800-8934882)
chr4 (285-367)||(19644689-19644771)
chr4 (285-367)||(33988128-33988210)
chr4 (191-261)||(51722161-51722231)
chr4 (285-356)||(29554100-29554171)
chr4 (18-60)||(51722411-51722453)
chr4 (86-135)||(51722323-51722372)
[»] chr3 (2 HSPs)
chr3 (281-367)||(20894110-20894196)
chr3 (285-367)||(51144763-51144845)
[»] chr8 (2 HSPs)
chr8 (285-358)||(36318850-36318923)
chr8 (285-367)||(4988425-4988507)
[»] scaffold0108 (1 HSPs)
scaffold0108 (285-367)||(10607-10689)
[»] chr1 (4 HSPs)
chr1 (285-360)||(34709275-34709350)
chr1 (285-367)||(24314718-24314800)
chr1 (285-367)||(25505353-25505435)
chr1 (285-356)||(43810519-43810590)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 15017460 - 15017374
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||| |||||||||| ||||||    
T  15017460 actaatttggctactctgtgtctgggtcttatggactgaacgtaacaataggtgttttaataatcatgtgactcctttgcccaggtt 15017374  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 5325543 - 5325464
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgc 360  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| |||| |||||||||||||  |||||| ||||||    
T  5325543 actaatttggctactctgtgtctggatcttatggattgaacgtaacaataggtgttttaataattacgttacttctttgc 5325464  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 10978363 - 10978446
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaac-tatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||  ||||| ||| ||||| |||||||||| | ||||||    
T  10978363 atttggcttctctgtgtctgggtcttatggactggacgtaacaaatatgtgtttcaatgattctattactcctttacccaggtt 10978446  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 22725790 - 22725865
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcct 356  Q
    ||||||||||||||  ||||  |||||||||||||||||| ||||| |||| |  ||||||||| || ||||||||    
T  22725790 actaatttggcttccttgtgcttgggtcttatggactgaatgtaacaataggttatttaataatactattactcct 22725865  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 5086383 - 5086465
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||  ||||||||||||| |||||||||||||| ||||||    
T  5086383 atttggctactctgtgtctgggttttatggactgaacgtaacaataagtgttttaataattatgttactcctttgcccaggtt 5086465  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 33019761 - 33019679
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||| || |||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  33019761 atttgcctactctgtgtctaggtcttatggactgaacgtaacaataggtgttttaataattatgttactcctttgcccaggtt 33019679  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 503892 - 503973
Alignment:
Q  286 tttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||  ||||| ||| ||||| |||||||||| | ||||||    
T  503892 tttggcttctctgtgcctgggtcttatggactgaacgtaataatatgtgtttcaatgattctattactcctttacccaggtt 503973  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 33639698 - 33639616
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  33639698 atttggcttctttgtgcctgggtattatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 33639616  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 8264026 - 8263953
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactccttt 358  Q
    ||||||||||||| || |||| |||||||||||||||||||| |||  ||||| ||| ||||| ||||||||||    
T  8264026 atttggcttctctatgcctggatcttatggactgaacgtaacaatatgtgtttcaatgattctattactccttt 8263953  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 19227294 - 19227212
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| ||||  ||||| |||||||||||||||||| |||  ||||| |||  |||| |||||||||| | ||||||    
T  19227294 atttggcttctttgtgcttgggttttatggactgaacgtaacaatatgtgtttcaatgcttctattactcctttactcaggtt 19227212  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 6970785 - 6970710
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgc 360  Q
    |||||||| || ||||||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||    
T  6970785 atttggctactttgtgtctgggtcttatggactcaacgtaacaataagtgttttaataattctgttactcctttgc 6970710  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 21439281 - 21439351
Alignment:
Q  297 tgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||  ||| |||||||||| ||||||    
T  21439281 tgtgtctgggtcttatggactgaacgtaacaataggtgttttaataatcatgtgactcctttgcccaggtt 21439351  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 25923851 - 25923769
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  25923851 atttggcttctttgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 25923769  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 17804726 - 17804655
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcct 356  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||  ||||| ||| ||||| ||| ||||    
T  17804726 atttggcttctctgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattctattattcct 17804655  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 34518964 - 34519046
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  34518964 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 34519046  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 45987830 - 45987748
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  45987830 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 45987748  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 33796727 - 33796767
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaa 325  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  33796727 atttggcttctttgtgtctgggttttatagactgaacgtaa 33796767  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 11575049 - 11575112
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 344  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  11575049 actaatttggctactctgtgtctgggtcttatggactgaacgtaacaataggtgttttaataat 11575112  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 5415505 - 5415587
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  5415505 atttggcttctttgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 5415587  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 22095610 - 22095684
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttg 359  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||| ||||||||| ||| |||||||    
T  22095610 atttggcttctttgtgtttgggttttatggactgaacgtaacaataggtgtttcaataattctattattcctttg 22095684  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 19114220 - 19114134
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||| ||| || ||||||||||||||||||||||||| |||| |||| ||||||||||||  ||| |||||||||| ||||||    
T  19114220 actaattttgctactttgtgtctgggtcttatggactgaacataacaataggtgttttaataatcatgtgactcctttgcccaggtt 19114134  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 30310230 - 30310144
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| |||| ||||||||||||  | | |||||||||| ||||||    
T  30310230 actaatttggctactctgtgtctctgtcttatggactgaacgtaacaataggtgttttaataatcatatgactcctttgcccaggtt 30310144  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 367
Target Start/End: Original strand, 48031509 - 48031584
Alignment:
Q  292 ttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||| || ||||||||||||||||||||||||  |||| |||||  |||||||| |||||||||||| ||||||    
T  48031509 ttctctttgcctgggtcttatggactgaacgtaataataggtgtttcgataattctattactcctttgcccaggtt 48031584  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 7473187 - 7473105
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||| ||||| ||||||||||||||||||| |||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  7473187 atttgacttctttgtgtctgggtcttatggaatgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 7473105  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 8934882 - 8934800
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||  ||||| ||| ||| | |||||||||| | ||||||    
T  8934882 atttggcttctttgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattttattactcctttacccaggtt 8934800  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 19644771 - 19644689
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  19644771 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 19644689  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 33988128 - 33988210
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| ||||||||||| |||||||||||||||||  |||  ||||| ||| ||||| |||||||||| | ||||||    
T  33988128 atttggcttctttgtgtctgggttttatggactgaacgtaataatatgtgtttcaatgattctattactcctttacccaggtt 33988210  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 51722231 - 51722161
Alignment:
Q  191 aatattggttaaaacatgagaactcttctaatgcggattgaaactaaaaagataaagcaattctaaaacgc 261  Q
    |||||||| |||||  ||||||||||||| ||| ||||||||||  ||||||||||||| |||||||||||    
T  51722231 aatattggataaaatttgagaactcttctgatgtggattgaaacagaaaagataaagcagttctaaaacgc 51722161  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 29554100 - 29554171
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcct 356  Q
    ||||||||||| |||| |||||| |||||||||||||||||  |||| |  || ||||||||| ||||||||    
T  29554100 atttggcttctttgtgcctgggtattatggactgaacgtaataataggttgttcaataattctattactcct 29554171  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 51722453 - 51722411
Alignment:
Q  18 acttctcatatgaatccctaaaagagcagacctgcaataataa 60  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  51722453 acttctcatatgaatccctaaaagcacaggcctgcaataataa 51722411  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 51722372 - 51722323
Alignment:
Q  86 atggaaatgatttattgtatttgctctactgtgcataatctaatttcatg 135  Q
    ||||||||  |||||||||||||||||||| |||||||||| ||| ||||    
T  51722372 atggaaatagtttattgtatttgctctactctgcataatctgattccatg 51722323  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 20894110 - 20894196
Alignment:
Q  281 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||||||| || ||||| |||||||||||||||||||||||| |||  |||||||||||   |||||||||||||| ||||||    
T  20894110 actaatttggctactttgtgtttgggtcttatggactgaacgtaacaataagtgttttaataaccatgttactcctttgcccaggtt 20894196  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 51144845 - 51144763
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    |||||||| || ||||| || || |||||||||||||||||| |||| ||||| ||||||||| |||||||||||| ||||||    
T  51144845 atttggctactttgtgtttgagttttatggactgaacgtaacaataggtgtttcaataattctattactcctttgcccaggtt 51144763  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 36318850 - 36318923
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactccttt 358  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||  ||||| ||| ||||| ||||||||||    
T  36318850 atttgacttctctgtgtctgcgtcttatggactgaacgtaacaatatgtgtttcaatgattctattactccttt 36318923  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 4988425 - 4988507
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||  |||| |||||| |||||||||||||||||| |||  ||||| ||  ||||| |||||||||| | ||||||    
T  4988425 atttggcttcgttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaacgattctattactcctttacccaggtt 4988507  T

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Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 10689 - 10607
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  10689 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattctattactcctttacccaggtt 10607  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 34709275 - 34709350
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgc 360  Q
    ||||| || ||||||||||| ||  ||||||||||||||||| | || ||||| ||||||||| ||||||||||||    
T  34709275 atttgactcctctgtgtctgagttctatggactgaacgtaacaacaggtgtttcaataattcttttactcctttgc 34709350  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 24314800 - 24314718
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| |||  | ||| ||| ||||| |||||||||| | ||||||    
T  24314800 atttggcttctttgtgcctgagtcttatggactgaacgtaacaatatgtttttcaatgattctattactcctttacccaggtt 24314718  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 25505353 - 25505435
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcctttgcacaggtt 367  Q
    ||||||||||| |||| |||||||||||| ||||||| |||| |||  ||||| ||| ||||| |||||||||| | ||||||    
T  25505353 atttggcttctttgtgcctgggtcttatgaactgaacataacaatatgtgtttcaatgattctattactcctttacccaggtt 25505435  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 43810590 - 43810519
Alignment:
Q  285 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgttactcct 356  Q
    ||||||||||| |||| |||||| |||||||||||||||||  |||| |  || ||||||||| ||||||||    
T  43810590 atttggcttctttgtgcctgggtgttatggactgaacgtaataataggttgttcaataattctattactcct 43810519  T

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