View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18847_high_10 (Length: 402)

Name: NF18847_high_10
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18847_high_10
NF18847_high_10
[»] chr7 (19 HSPs)
chr7 (81-385)||(25690639-25690944)
chr7 (163-239)||(45773203-45773280)
chr7 (162-327)||(31726557-31726723)
chr7 (158-235)||(16780770-16780848)
chr7 (163-319)||(22600648-22600805)
chr7 (162-260)||(101272-101371)
chr7 (162-260)||(41195695-41195794)
chr7 (160-236)||(35851970-35852052)
chr7 (162-237)||(11754691-11754767)
chr7 (162-289)||(34953823-34953956)
chr7 (164-245)||(41432909-41432990)
chr7 (165-233)||(28557248-28557317)
chr7 (193-232)||(48078613-48078652)
chr7 (161-233)||(5721685-5721758)
chr7 (163-232)||(5815123-5815193)
chr7 (214-260)||(11687825-11687871)
chr7 (216-301)||(16780812-16780897)
chr7 (162-237)||(6394540-6394616)
chr7 (193-285)||(42094287-42094379)
[»] chr8 (13 HSPs)
chr8 (162-327)||(34273045-34273211)
chr8 (162-321)||(38924402-38924562)
chr8 (162-232)||(8238754-8238825)
chr8 (160-269)||(10340221-10340331)
chr8 (160-260)||(9030590-9030691)
chr8 (160-282)||(559955-560079)
chr8 (174-237)||(32729430-32729494)
chr8 (160-260)||(29204605-29204706)
chr8 (154-192)||(10340280-10340318)
chr8 (199-237)||(33435405-33435443)
chr8 (159-259)||(4795658-4795759)
chr8 (274-326)||(959989-960041)
chr8 (201-237)||(36110633-36110669)
[»] chr3 (12 HSPs)
chr3 (163-241)||(52205037-52205114)
chr3 (154-260)||(12767309-12767416)
chr3 (173-236)||(25258075-25258139)
chr3 (165-234)||(27177327-27177397)
chr3 (162-233)||(6588319-6588391)
chr3 (162-229)||(40413445-40413513)
chr3 (161-260)||(50670077-50670178)
chr3 (193-233)||(54905140-54905180)
chr3 (160-256)||(581040-581136)
chr3 (164-216)||(5182245-5182298)
chr3 (154-245)||(15513452-15513544)
chr3 (193-233)||(37058991-37059031)
[»] chr4 (9 HSPs)
chr4 (164-268)||(40423288-40423393)
chr4 (160-232)||(25844268-25844341)
chr4 (168-232)||(79525-79590)
chr4 (160-242)||(43115593-43115676)
chr4 (160-228)||(37397965-37398034)
chr4 (175-237)||(11548162-11548225)
chr4 (162-232)||(24673027-24673098)
chr4 (162-238)||(9954523-9954600)
chr4 (216-260)||(43115583-43115627)
[»] scaffold0110 (1 HSPs)
scaffold0110 (173-327)||(31311-31466)
[»] chr2 (15 HSPs)
chr2 (155-232)||(12670763-12670841)
chr2 (162-234)||(4422821-4422894)
chr2 (178-245)||(15538954-15539022)
chr2 (172-238)||(21488860-21488927)
chr2 (178-332)||(28314574-28314729)
chr2 (193-327)||(15404951-15405085)
chr2 (160-233)||(33710578-33710652)
chr2 (172-228)||(14442110-14442167)
chr2 (160-222)||(7152093-7152156)
chr2 (193-244)||(11279970-11280021)
chr2 (161-229)||(37172605-37172674)
chr2 (193-237)||(10633410-10633454)
chr2 (160-231)||(30481686-30481758)
chr2 (216-260)||(33710568-33710612)
chr2 (165-232)||(34557336-34557404)
[»] chr6 (3 HSPs)
chr6 (156-231)||(33617647-33617723)
chr6 (161-326)||(32820790-32820956)
chr6 (173-235)||(22682572-22682636)
[»] chr5 (5 HSPs)
chr5 (154-289)||(18398515-18398651)
chr5 (165-241)||(35895025-35895102)
chr5 (162-261)||(9962897-9962997)
chr5 (193-260)||(896102-896169)
chr5 (216-327)||(18398611-18398722)
[»] chr1 (16 HSPs)
chr1 (210-327)||(31847321-31847438)
chr1 (193-260)||(34123155-34123222)
chr1 (160-260)||(25484947-25485048)
chr1 (195-237)||(17916184-17916226)
chr1 (193-319)||(32191071-32191197)
chr1 (160-229)||(34062649-34062719)
chr1 (164-260)||(39902275-39902372)
chr1 (197-237)||(9450235-9450275)
chr1 (173-237)||(42826416-42826479)
chr1 (193-260)||(12082186-12082253)
chr1 (201-252)||(24603050-24603101)
chr1 (176-232)||(1831258-1831315)
chr1 (154-227)||(29260071-29260144)
chr1 (193-237)||(1245941-1245984)
chr1 (173-208)||(2930286-2930322)
chr1 (193-229)||(5760073-5760109)
[»] scaffold0223 (1 HSPs)
scaffold0223 (158-259)||(16314-16417)
[»] scaffold0471 (1 HSPs)
scaffold0471 (201-237)||(501-537)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 81 - 385
Target Start/End: Original strand, 25690639 - 25690944
Alignment:
Q  81 aggcccatataataccagcctccaactcttgaaaattgctcctctccctttccaaattactaattcctctaactcaacatgagttaactcacgctgacac 180  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25690639 aggcccatatcataccagcctccaactcttgaaaattgctcctctccctttccaaattactaattcctctaactcaacatgagttaactcacgctgacac 25690738  T
Q  181 tttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaact 279  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25690739 tttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaaaaagtcaagcagaaattaact 25690838  T
Q  280 catgctgaatgaaggaaatgagtaattttgaaagggagaagaacaattatttttccgaactcttccatggttgataagctgaagccttgttttgattaag 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  25690839 catgctgaatgaaggaaatgagtaattttgaaagggagaagaacaattatttttcccaactcttccatggttggtaagctgaagccttgttttgattaag 25690938  T
Q  380 ccatat 385  Q
    ||||||    
T  25690939 ccatat 25690944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 45773203 - 45773280
Alignment:
Q  163 gttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcat 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||    
T  45773203 gttaactcacgctgacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaagcgtcagcat 45773280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 327
Target Start/End: Complemental strand, 31726723 - 31726557
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||| || || |||||||| || ||||| ||||||  |||||||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||    
T  31726723 agttaacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagtatcagcatgagttcactcacgctgaaaaa 31726624  T
Q  261 agtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 327  Q
     |   ||||  | |||||||| | ||||| |||| |||| | |||||| | ||||||||||||||||    
T  31726623 tgctgagcatgagttaactcacgatgaattaagggaatgggcaattttaagagggagaagaacaatt 31726557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 16780848 - 16780770
Alignment:
Q  158 catgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtca 235  Q
    |||||||||||| |||| | ||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  16780848 catgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtgtca 16780770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 22600648 - 22600805
Alignment:
Q  163 gttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaa 261  Q
    |||||||||| |||||| |||| |||||| | |||| ||||||||||||||||||||| ||||||| |||| || ||||| ||| || || ||||||||     
T  22600648 gttaactcacactgacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaatagtgccaacatgagttaacttacactgaaaaat 22600747  T
Q  262 gtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaa 319  Q
     || | | | | |||||||  ||||| | |||||||||||||||||| || |||||||    
T  22600748 atcgaacgggagttaactcccgctgagttaaggaaatgagtaattttaaatgggagaa 22600805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 101371 - 101272
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||| |||  ||||||||||||| || ||||||||||||||| | | |||||||||||||||||||||||| ||| ||| ||  ||||||||||    
T  101371 agttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaactaccgctgaaaaa 101272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 41195695 - 41195794
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||||||||||||||| || | | | |||||||||||||||| |||||||| |||||||||||||||| | ||| ||| ||  ||||||||||    
T  41195695 agttaactcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgagttaacttccgctgaaaaa 41195794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 35852052 - 35851970
Alignment:
Q  160 tgagttaactcacgc-----tgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcag 236  Q
    |||||||||||||||     |||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  35852052 tgagttaactcacgctgaagtgacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcag 35851970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 11754767 - 11754691
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||   |||||||||| |||||||||||||||||    
T  11754767 agttaactgtcgctgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtgtcagc 11754691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 34953956 - 34953823
Alignment:
Q  162 agttaactcacgctgacactttttagatcggtc------aatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctg 255  Q
    ||||||||||||||||||||||| ||||||||       |||||||||||||  ||  |||||||||||| |||||||  |||||| ||| ||  |||||    
T  34953956 agttaactcacgctgacacttttaagatcggtttgatttaatcactttttaaatcgaatcaaccgatcttcaaagtgttggcatgagttaactgccgctg 34953857  T
Q  256 aaaaaagtcaagcagaaattaactcatgctgaat 289  Q
    ||||| ||||||||  | ||||||| ||||||||    
T  34953856 aaaaatgtcaagcatgagttaactcctgctgaat 34953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 41432990 - 41432909
Alignment:
Q  164 ttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaatta 245  Q
    ||||||||| || |||||||||||||||| |||||||||||||||| ||| |||| | |||| |||||||||| |||||||||    
T  41432990 ttaactcacactaacactttttagatcggttcaatcactttttaagtcggatcaatc-atctgaaaagtgtcaacatgaatta 41432909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 28557317 - 28557248
Alignment:
Q  165 taactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    |||||||||||||||||||| ||||||| |||||||  |||||| || ||||||| ||||||||||||||    
T  28557317 taactcacgctgacacttttaagatcggttcaatcatattttaacccagttcaactgatcttaaaagtgt 28557248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 48078613 - 48078652
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  48078613 tcaatcactttttaagtcggttcaaccgatcttaaaagtg 48078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 5721685 - 5721758
Alignment:
Q  161 gagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    ||||||||||||| ||| |||||| |||||| | |||| |||||| ||  ||||||||||||||||||||||||    
T  5721685 gagttaactcacgatgagacttttaagatcgattcaattacttttcaaatcggttcaaccgatcttaaaagtgt 5721758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 5815193 - 5815123
Alignment:
Q  163 gttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||||||||| ||  ||||||||| || ||| ||||||||||||||| | | |||||||||||||||||||    
T  5815193 gttaactcacactagcactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtg 5815123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 11687825 - 11687871
Alignment:
Q  214 tcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||||||||||| |||| ||| ||| ||||||||||||||    
T  11687825 tcaaccgatcttaaaagtgacagcgtgagttaactcacgctgaaaaa 11687871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 16780812 - 16780897
Alignment:
Q  216 aaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgag 301  Q
    ||||||||||||||||| | || | | ||| |||| ||||||||| ||| ||||  | |||||||||| ||||| |||||||||||    
T  16780812 aaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagttaactcatgttgaattaaggaaatgag 16780897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 6394616 - 6394540
Alignment:
Q  162 agttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||||||| |||| | ||||||||| |||||||| |||||||  || ||||  |||||||||| |||||||    
T  6394616 agttaactcacgctaacacgtattagatcggttcaatcaccttttaagatgggtcaattgatcttaaaaatgtcagc 6394540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 42094379 - 42094287
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgct 285  Q
    |||||||||||||||| | | | ||||| |||||||||||||| | ||| ||| | || ||||||||| ||||| ||  ||||||||| ||||    
T  42094379 tcaatcactttttaagtcaggttaaccggtcttaaaagtgtcaacgtgagttaacccatgctgaaaaatgtcaaacatgaattaactcctgct 42094287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 162 - 327
Target Start/End: Complemental strand, 34273211 - 34273045
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||| ||   |||||| |||||||| |||||||| |||||| ||||||||||||| |||||||||||||| ||| |||  |||||||||||||    
T  34273211 agttaactcacactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaa 34273112  T
Q  261 agtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 327  Q
     | | ||||||| |||||||| ||||| | ||||||||||| |||||| |||||||||||| |||||    
T  34273111 tgccgagcagaagttaactcacgctgagttaaggaaatgagcaattttaaaagggagaagagcaatt 34273045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 38924402 - 38924562
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||  |||| ||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||| |||| ||| ||| ||  ||||||||||    
T  38924402 agttaactcgtgctggcacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaa 38924501  T
Q  261 agtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaaga 321  Q
     | | ||  | | |||||||||||||| | ||| |||||||||||||| || |||||||||    
T  38924502 tgccgagtgggagttaactcatgctgagttaagcaaatgagtaattttaaatgggagaaga 38924562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 8238754 - 8238825
Alignment:
Q  162 agttaactcacgctgacactttttagatc-ggtcaatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| || ||| |||||||||||||||||||    
T  8238754 agttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtg 8238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 10340221 - 10340331
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||  || ||  |||||||||||||||||||| ||| ||| |||||| |||||    
T  10340221 tgagttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaaa 10340320  T
Q  259 aaagtcaagca 269  Q
    || | ||||||    
T  10340321 aatgccaagca 10340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 9030590 - 9030691
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    ||||||||||||| | ||||||||| |||||| | ||||||||||||||  ||||||||  ||||||||||||||  || ||||||| |||||| |||||    
T  9030590 tgagttaactcacaccgacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtgtgcgcgtgaattaactcacgttgaaa 9030689  T
Q  259 aa 260  Q
    ||    
T  9030690 aa 9030691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 559955 - 560079
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    |||||||||||||||||||| |||| ||| || | |||| | ||||||||  |||||||||||| |||||| || |||| ||| ||| |||||| |||||    
T  559955 tgagttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaa 560054  T
Q  259 aaa-gtcaagcagaaattaactcat 282  Q
    ||| |||||||  || |||||||||    
T  560055 aaatgtcaagcgtaagttaactcat 560079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 32729430 - 32729494
Alignment:
Q  174 ctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    ||||||||||| ||||| || |||| | |||||||| ||||||||||||||||||||||||||||    
T  32729430 ctgacacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtgtcagc 32729494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 29204605 - 29204706
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    |||||||| |||||||   |||||| | |||||| ||||||||||||||| ||| ||||| ||||||||||||| |||| | | ||| || |||||||||    
T  29204605 tgagttaattcacgctagtacttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaa 29204704  T
Q  259 aa 260  Q
    ||    
T  29204705 aa 29204706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 10340318 - 10340280
Alignment:
Q  154 tcaacatgagttaactcacgctgacactttttagatcgg 192  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  10340318 tcaacgtgagttaactcacgctgacacttttaagatcgg 10340280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 33435443 - 33435405
Alignment:
Q  199 actttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  33435443 actttttaagtcggttcaaccgatcttaaaagtgacagc 33435405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 4795658 - 4795759
Alignment:
Q  159 atgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaa 257  Q
    |||||||| ||| || |||||||||||| |||||| |||| | ||||||| |  |||||||| |||||||||||| || ||  | |||||| ||||||||    
T  4795658 atgagttatctctcggtgacactttttatatcggttcaattaatttttaaactagttcaaccaatcttaaaagtgccaacaaaagttaccttacgctgaa 4795757  T
Q  258 aa 259  Q
    ||    
T  4795758 aa 4795759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 960041 - 959989
Alignment:
Q  274 ttaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaat 326  Q
    |||||| ||||||||| |||  ||||||||||||||||||| |||| ||||||    
T  960041 ttaactgatgctgaattaagataatgagtaattttgaaaggaagaaaaacaat 959989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 36110669 - 36110633
Alignment:
Q  201 tttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  36110669 tttttaagtcggttcaactgatcttaaaagtgtcagc 36110633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 52205114 - 52205037
Alignment:
Q  163 gttaactcacgctgacactttttagatcggtcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatga 241  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  52205114 gttaactcacgctgatactttttagatcgttcaatcac-ttttaagtcgggtcaaccgatcttaaaagtgtcagcatga 52205037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 12767416 - 12767309
Alignment:
Q  154 tcaacatgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacg 252  Q
    ||||| |||||||||||||||| |||||||| |||||| | ||||||||||||||| ||| ||||||||||||| |||||||||| ||  |||  |||||    
T  12767416 tcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggttaattcacg 12767317  T
Q  253 ctgaaaaa 260  Q
    ||||||||    
T  12767316 ctgaaaaa 12767309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 25258139 - 25258075
Alignment:
Q  173 gctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcag 236  Q
    |||||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||    
T  25258139 gctgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtgtcag 25258075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 27177327 - 27177397
Alignment:
Q  165 taactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtc 234  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||  || |||||||||||||||||||||    
T  27177327 taactcacactgacactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtgtc 27177397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 6588319 - 6588391
Alignment:
Q  162 agttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    |||||||||||||||||||||||| |||||| |||| ||  ||||||| ||| ||||||||||||||||||||    
T  6588319 agttaactcacgctgacacttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaagtgt 6588391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 40413513 - 40413445
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaa 229  Q
    |||||||||||||  ||||| || |||||||| ||||||||||||||| ||| ||||||||||||||||    
T  40413513 agttaactcacgccaacactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 50670178 - 50670077
Alignment:
Q  161 gagttaactcacgctgacacttttta-gatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    |||||||| |||||||| |||||||| ||||| | |||||| |||||| |   ||||||||||| |||||||||||||| | | ||| ||||||||||||    
T  50670178 gagttaacccacgctgaaactttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaactcacgctgaaa 50670079  T
Q  259 aa 260  Q
    ||    
T  50670078 aa 50670077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 54905140 - 54905180
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  54905140 tcaatcactttttaagtcggtttaaccgatcttaaaagtgt 54905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 581136 - 581040
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctga 256  Q
    ||||||||||||| ||| ||||||| ||| | || |||| |||||||||| | ||||||||||||||||||||  |||| ||| ||| ||||| ||||    
T  581136 tgagttaactcacactg-cacttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaactcacactga 581040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 5182298 - 5182245
Alignment:
Q  164 ttaactcacgctgacactttttagatc-ggtcaatcactttttaagccggttca 216  Q
    |||||||||||||||||||||  |||| | ||||||| ||||||||||||||||    
T  5182298 ttaactcacgctgacacttttatgatcagttcaatcaatttttaagccggttca 5182245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 15513452 - 15513544
Alignment:
Q  154 tcaacatgagttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaatta 245  Q
    ||||| ||| ||||||||| | ||||||||| |||| |  ||||||||||||| || |  || |||||||||||||||||  |||||||||||    
T  15513452 tcaacgtgaattaactcacaccgacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaagtgctagcatgaatta 15513544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 37059031 - 37058991
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  37059031 tcaatcattttttaagtcgattcaaccgatcttaaaagtgt 37058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 40423393 - 40423288
Alignment:
Q  164 ttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaag 262  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||| ||| ||  || ||||||| |    
T  40423393 ttaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttgaaaaatg 40423294  T
Q  263 tcaagc 268  Q
    ||||||    
T  40423293 tcaagc 40423288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 25844341 - 25844268
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||||||||||| |||||||||||| |||| | | ||||| |||||||||||||||||||||||||||||||||    
T  25844341 tgagttaactcatgctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtg 25844268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 79590 - 79525
Alignment:
Q  168 ctcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||    
T  79590 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 79525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 43115593 - 43115676
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaa 242  Q
    ||||||||||||| ||||||||||| ||||||| ||||| | |||||||| |||||||||| | |||| ||||| |||| ||||    
T  43115593 tgagttaactcacactgacacttttaagatcggttcaataattttttaagtcggttcaaccaaccttagaagtggcagcgtgaa 43115676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 37398034 - 37397965
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaa 228  Q
    |||||||||||| ||| ||| |||| |||||||| ||||||||||||||| | |||||||| ||||||||    
T  37398034 tgagttaactcaggctaacatttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 11548225 - 11548162
Alignment:
Q  175 tgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||| |||||||| || || ||||||||| |||||| |||||| ||||||||||||||    
T  11548225 tgacacttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtgtcagc 11548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 24673098 - 24673027
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||||||||||||||   ||||||||||| || ||||||||||||| | ||| |||||| ||||||||||||    
T  24673098 agttaactcacgctggtgctttttagatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtg 24673027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 9954523 - 9954600
Alignment:
Q  162 agttaactcacgctgacactttttagatc-ggtcaatcactttttaagccggttcaaccgatcttaaaagtgtcagca 238  Q
    |||||||||| ||||||||||||||||||   ||||| | ||||||||  || |||| |||||||||||||| |||||    
T  9954523 agttaactcaagctgacactttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaagtgacagca 9954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 43115627 - 43115583
Alignment:
Q  216 aaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||||||||||||||  ||| ||| ||||||||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaa 43115583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 327
Target Start/End: Complemental strand, 31466 - 31311
Alignment:
Q  173 gctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcaga 271  Q
    |||| ||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||| |||  |  ||| ||| |||||||||||||| | | | |       
T  31466 gctggcacttttaagatcggctcaatcactttttaagctggttcaaccaatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtg 31367  T
Q  272 aattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 327  Q
    | |||||||||||||||| |||  |||||| |||||||||||| |||||| |||||    
T  31366 agttaactcatgctgaattaagagaatgagcaattttgaaaggaagaagagcaatt 31311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 12670763 - 12670841
Alignment:
Q  155 caacatgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||| ||| ||||||||||||||||||||| |||||||| |||||| |||||||||||  |||||||||||||||||||    
T  12670763 caacgtgacttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagtg 12670841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 4422894 - 4422821
Alignment:
Q  162 agttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtc 234  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||    
T  4422894 agttaactcacgccgtcactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagtgtc 4422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 15538954 - 15539022
Alignment:
Q  178 cactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaatta 245  Q
    ||||||| |||||||| |||| |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  15538954 cacttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcgtgaatta 15539022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 21488860 - 21488927
Alignment:
Q  172 cgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagca 238  Q
    |||| |||||||| |||||||| |||||| |||||||| | |||||||||||||||||||||||||||    
T  21488860 cgctaacacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcagca 21488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 28314729 - 28314574
Alignment:
Q  178 cactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaatta 276  Q
    ||||||| |||||||| ||||||||||||||   |||| ||||||||||||||||||||||| || ||| |||  | |||||||   ||||||  | |||    
T  28314729 cacttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtgtcagcaggagttaactctagttgaaaaataccaagcaacagtta 28314630  T
Q  277 actcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaattatttt 332  Q
    |||    |||| | || | ||||| |||||||||||||||||||||||||| ||||    
T  28314629 actttaactgagttaatggaatgaataattttgaaagggagaagaacaattttttt 28314574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 15404951 - 15405085
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaa 292  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| | ||| ||| |||||  |||| |||||| |  |  | ||||||   ||||||  ||    
T  15404951 tcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaactcacagtgaataaagtcgaatatgagttaacttccgctgaaataa 15405050  T
Q  293 ggaaatgagtaattttgaaagggagaagaacaatt 327  Q
     |||| ||| |||||||||||||||||||||||||    
T  15405051 cgaaacgagaaattttgaaagggagaagaacaatt 15405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 33710578 - 33710652
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgt 233  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||| ||| ||| ||||| | |||||||||||||    
T  33710578 tgagttaacttacgctgacacttttaagatcggttcaatcattttctaaaccgattcaaacaatcttaaaagtgt 33710652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 14442110 - 14442167
Alignment:
Q  172 cgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaa 228  Q
    ||||||||||||| ||||| || |||||||||||||||||| |||||| |||||||||    
T  14442110 cgctgacacttttaagatcagtacaatcactttttaagccgattcaactgatcttaaa 14442167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 7152093 - 7152156
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgat 222  Q
    |||||||||||||| | |||||||| | |||||| |||| ||||||||| ||||||||||||||    
T  7152093 tgagttaactcacgttaacacttttaatatcggttcaattactttttaaaccggttcaaccgat 7152156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 11280021 - 11279970
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaatt 244  Q
    |||||||||||||||| ||||||||||||| |||||| ||||| | ||||||    
T  11280021 tcaatcactttttaagtcggttcaaccgattttaaaattgtcaacgtgaatt 11279970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 37172674 - 37172605
Alignment:
Q  161 gagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaa 229  Q
    |||||||||| |  |||||||||| | |||||| ||||||||||||||| | |||||||| |||||||||    
T  37172674 gagttaactcccattgacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 10633410 - 10633454
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    ||||||| |||||||| || ||||||||||||||||||| |||||    
T  10633410 tcaatcaatttttaagtcgtttcaaccgatcttaaaagtatcagc 10633454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 30481686 - 30481758
Alignment:
Q  160 tgagttaactcacgctgacactttttagatc-ggtcaatcactttttaagccggttcaaccgatcttaaaagt 231  Q
    ||||||||||||| ||| ||||||| ||||| | ||||| | ||||||||||  ||||||| |||||||||||    
T  30481686 tgagttaactcacactggcacttttaagatcagttcaataattttttaagccaattcaacctatcttaaaagt 30481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 33710612 - 33710568
Alignment:
Q  216 aaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||||||||||||||| | | ||| ||||||||||||||    
T  33710612 aaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaa 33710568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 34557404 - 34557336
Alignment:
Q  165 taactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    |||||||||| |||| |||| ||||| || |||||| |||||||  |||||||| ||||||||||||||    
T  34557404 taactcacgccgacatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtg 34557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 33617647 - 33617723
Alignment:
Q  156 aacatgagttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagt 231  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||||  ||| ||||||||| |||||||||||||    
T  33617647 aacatgagttaactcacgctgacatttttaagatcggttcaatcacttgctaatccggttcaatcgatcttaaaagt 33617723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 32820790 - 32820956
Alignment:
Q  161 gagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaa 259  Q
    |||||||||| | |||||||| || |||||||| ||  |||||||||||  |||||||| ||| ||||||||| ||||| |  ||| |||   |||||||    
T  32820790 gagttaactcccactgacactattaagatcggttcagacactttttaagttggttcaactgatgttaaaagtgacagcaagtgttaactctaactgaaaa 32820889  T
Q  260 aagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaat 326  Q
    | ||| ||| ||| |||||||  ||||| | |||| |||||  |||||| |||| ||||||||||||    
T  32820890 atgtcgagcggaagttaactctagctgagttaagggaatgaacaattttaaaagagagaagaacaat 32820956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 22682572 - 22682636
Alignment:
Q  173 gctgacactttttagatc--ggtcaatcactttttaagccggttcaaccgatcttaaaagtgtca 235  Q
    |||||||||||| |||||  | ||||||| ||||||||  |||||||||||||||||||||||||    
T  22682572 gctgacacttttaagatcctgttcaatcattttttaagttggttcaaccgatcttaaaagtgtca 22682636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 18398651 - 18398515
Alignment:
Q  154 tcaacatgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacg 252  Q
    ||||| |||||||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| || | ||||| ||| ||| ||||      
T  18398651 tcaacgtgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatcttataattttcagcgtgagttaactcaga 18398552  T
Q  253 ctgaaaaaagtcaagcagaaattaactcatgctgaat 289  Q
    |||||||| | | |||   | ||||||||||||||||    
T  18398551 ctgaaaaatgccgagcgtgagttaactcatgctgaat 18398515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 35895025 - 35895102
Alignment:
Q  165 taactcacgctgacactttttagatcggtcaa-tcactttttaagccggttcaaccgatcttaaaagtgtcagcatga 241  Q
    ||||| |||||||||||||||||||| || || | |||||||||| ||| |||| ||||||||||| |||||| ||||    
T  35895025 taacttacgctgacactttttagatcagttaaattactttttaagtcgggtcaatcgatcttaaaaatgtcagtatga 35895102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 9962997 - 9962897
Alignment:
Q  162 agttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||||  |||||||||| |||| | | ||||||||||| || | ||||||||||||||||||| ||  ||| ||| ||| |||| |||||||||    
T  9962997 agttaactcacaatgacacttttaagattgattcaatcacttttcaatctggttcaaccgatcttaaaaatgctagcgtgagttaactcatgctgaaaaa 9962898  T
Q  261 a 261  Q
    |    
T  9962897 a 9962897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 896102 - 896169
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||||||| |||||||||  |||||||||||| | ||| ||| ||| ||||||| ||||||    
T  896102 tcaatcactttttaaaccggttcaattgatcttaaaagtcttagcgtgagttaactcacgccgaaaaa 896169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 18398611 - 18398722
Alignment:
Q  216 aaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaaggg 315  Q
    |||||||||||||||||||||  | | ||| |||||| |||||||  || |||   | |||||||||||||||| ||||||||||| ||    |||||||    
T  18398611 aaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagttaactcatgctgaattaaggaaatgaggaaaaacgaaaggg 18398710  T
Q  316 agaagaacaatt 327  Q
    |||| |||||||    
T  18398711 agaaaaacaatt 18398722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 327
Target Start/End: Complemental strand, 31847438 - 31847321
Alignment:
Q  210 cggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttg 309  Q
    |||||| |||||||||||||||||||||  || ||| |||||||||||||| ||| |||  || ||||||  |||||  | || | |||||| |||||||    
T  31847438 cggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaattttg 31847339  T
Q  310 aaagggagaagaacaatt 327  Q
    |||||||||||| |||||    
T  31847338 aaagggagaagagcaatt 31847321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 34123222 - 34123155
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||| ||| ||  ||||||||||    
T  34123222 tcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaa 34123155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 25484947 - 25485048
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaa 258  Q
    |||||||| | |||||| ||||||| |||||  | |||||||||||||||||  ||||| |||||||||||||| |||| ||| ||| ||||||||| ||    
T  25484947 tgagttaatttacgctggcacttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaa 25485046  T
Q  259 aa 260  Q
    ||    
T  25485047 aa 25485048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 17916226 - 17916184
Alignment:
Q  195 aatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  17916226 aatcactttttaagtcggttcaatcgatcttaaaagtgtcagc 17916184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 32191197 - 32191071
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaa 292  Q
    ||||||| ||||||||  |||||||||||||||||||||| |||| ||| |||    ||||||||||| ||| ||      ||||||||| | |||| ||    
T  32191197 tcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaaatgtcgagtgagtgttaactcataccgaattaa 32191098  T
Q  293 ggaaatgagtaattttgaaagggagaa 319  Q
    || ||| ||||||||||||||||||||    
T  32191097 gggaataagtaattttgaaagggagaa 32191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 34062649 - 34062719
Alignment:
Q  160 tgagttaactcacgctgacactttttagatcgg-tcaatcactttttaagccggttcaaccgatcttaaaa 229  Q
    ||||| ||||||||||||||||||| | ||||| |||||||||||||||| || |||||| ||| ||||||    
T  34062649 tgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 39902275 - 39902372
Alignment:
Q  164 ttaactcacgctgacacttttt-agatcgg-tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    |||||||||||||||||||||| | ||||| ||||||| |||||| ||| |||||||||||| ||||||| || || ||| ||| |||||||| |||||    
T  39902275 ttaactcacgctgacactttttaaaatcggttcaatcattttttacgccagttcaaccgatcctaaaagt-tccgcgtgatttaactcacgctaaaaaa 39902372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 9450235 - 9450275
Alignment:
Q  197 tcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  9450235 tcactttttaagtcggttcaaccgatcttaaaagtgccagc 9450275  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 42826479 - 42826416
Alignment:
Q  173 gctgacactttttagatcggtcaatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||||||| |||| | |||||||||||||||| ||||| |||| ||||| |||||||||||    
T  42826479 gctgacacttttaagatggttcaatcactttttaagtcggtttaaccaatctt-aaagtgtcagc 42826416  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 12082186 - 12082253
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacgctgaaaaa 260  Q
    ||||||||||| |||| ||| |||||||||||||||||||  ||||||| ||| |||| ||| |||||    
T  12082186 tcaatcactttgtaagtcgggtcaaccgatcttaaaagtggtagcatgagttaactcatgcttaaaaa 12082253  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 24603101 - 24603050
Alignment:
Q  201 tttttaagccggttcaaccgatcttaaaagtgtcagcatgaattacctcacg 252  Q
    ||||||||| ||||||||||||||||||||||| | ||||| ||| ||||||    
T  24603101 tttttaagctggttcaaccgatcttaaaagtgttatcatgagttaactcacg 24603050  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 1831315 - 1831258
Alignment:
Q  176 gacactttttagatcggtc-aatcactttttaagccggttcaaccgatcttaaaagtg 232  Q
    ||||||||| ||||||||  |||| ||||||||| ||||||||| |||||||||||||    
T  1831315 gacacttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaagtg 1831258  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 29260144 - 29260071
Alignment:
Q  154 tcaacatgagttaactcacgctgacactttttagatcggtcaatcactttttaagccggttcaaccgatcttaa 227  Q
    ||||||||||||||||| || ||| | |||| |||| | |||||||||||||||   ||||||||| |||||||    
T  29260144 tcaacatgagttaactctcgttgatatttttaagatggatcaatcactttttaaattggttcaaccaatcttaa 29260071  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 1245984 - 1245941
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    ||||||||||||||| | | |||||||||||||||||||||||||    
T  1245984 tcaatcactttttaatcag-ttcaaccgatcttaaaagtgtcagc 1245941  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 2930322 - 2930286
Alignment:
Q  173 gctgacactttttagatcgg-tcaatcactttttaag 208  Q
    |||||||||||||||||||| ||||||||||||||||    
T  2930322 gctgacactttttagatcggttcaatcactttttaag 2930286  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 5760073 - 5760109
Alignment:
Q  193 tcaatcactttttaagccggttcaaccgatcttaaaa 229  Q
    |||||||||||||||| || |||||||||||||||||    
T  5760073 tcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 16314 - 16417
Alignment:
Q  158 catgagttaactcacgctgacactttttagatcggt-caatcactttttaagccggttcaaccgatctt-aaaagtgtcagcatgaattacctcacgctg 255  Q
    |||||||||  |||||||| ||||||| ||| |||| |||| |||||||||  |||||||||||||||| |||||| |||||| || ||| |||||| ||    
T  16314 catgagttacttcacgctgtcacttttaagaccggttcaattactttttaaatcggttcaaccgatcttaaaaagtatcagcaagagttaactcacgttg 16413  T
Q  256 aaaa 259  Q
    ||||    
T  16414 aaaa 16417  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 537 - 501
Alignment:
Q  201 tttttaagccggttcaaccgatcttaaaagtgtcagc 237  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  537 tttttaagtcggttcaactgatcttaaaagtgtcagc 501  T

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