View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_15 (Length: 377)
Name: NF18847_high_15
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 4676502 - 4676860
Alignment:
| Q |
6 |
aggagcagagaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
105 |
Q |
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| T |
4676502 |
aggagcagaaaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
4676601 |
T |
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| Q |
106 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
205 |
Q |
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| T |
4676602 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
4676701 |
T |
|
| Q |
206 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4676702 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacct |
4676801 |
T |
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| Q |
306 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtg |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676802 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtg |
4676860 |
T |
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