View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18847_high_20 (Length: 313)

Name: NF18847_high_20
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18847_high_20
NF18847_high_20
[»] chr2 (1 HSPs)
chr2 (19-308)||(14926250-14926539)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 14926250 - 14926539
Alignment:
Q  19 aaaggatccaaagtataaaatcacttggggaagtgacataatgattcaaatatttgtaatgcaagcttttgtatatgacgaggagttacttactgaacac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14926250 aaaggatccaaagtataaaatcacttggggaagtgacataatgattcaaatatttgtaatgcaagcttttgtatatgacgaggagttacttactgaacac 14926349  T
Q  119 aataatgaaatgtgaattggggttnnnnnnngtgtccaaataaaatccatcaccccccattgttttgcgtgaaaaagtttacacaaatttagcattcaaa 218  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14926350 aataatgaaatgtgaattggggttaaaaaaagtgtccaaataaaatccatcaccccccattgttttgcgtgaaaaagtttacacaaatttagcattcaaa 14926449  T
Q  219 gttgtgtttgaagggtcaatatccttcttcctcaattacccaaaatatcctcctcactttccctaaacttgcatagtatcctttgcttct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14926450 gttgtgtttgaagggtcaatatccttcttcctcaattacccaaaatatcctcctcactttccctaaacttgcatagtatcctttgtttct 14926539  T

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