View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_21 (Length: 312)
Name: NF18847_high_21
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 6915751 - 6915476
Alignment:
| Q |
29 |
ctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatac |
128 |
Q |
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| T |
6915751 |
ctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgcacaatcaacaccaaatac |
6915652 |
T |
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| Q |
129 |
agcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaattttctttccagtgctaaca |
228 |
Q |
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| T |
6915651 |
agcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaattttctttccagtgctaaca |
6915552 |
T |
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| Q |
229 |
ttaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgct |
304 |
Q |
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| T |
6915551 |
ttaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgct |
6915476 |
T |
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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 15040273 - 15040345
Alignment:
| Q |
29 |
ctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatc |
101 |
Q |
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| T |
15040273 |
ctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaagtatc |
15040345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
| Q |
106 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
161 |
Q |
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| T |
15041840 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
| Q |
211 |
ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt |
273 |
Q |
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| T |
15043792 |
ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
| Q |
77 |
taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc |
155 |
Q |
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|||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| ||||| |
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| T |
35856932 |
taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc |
35856854 |
T |
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