View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_25 (Length: 255)
Name: NF18847_high_25
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 9562721 - 9562846
Alignment:
| Q |
1 |
acagacaacaacacaaattcatgaaaccttaaacaaaccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9562721 |
acagacaacaacacaaattcatgaaactttaaacaagccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttca |
9562820 |
T |
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| Q |
101 |
gttacatgctgtgttctgtgacagaa |
126 |
Q |
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| T |
9562821 |
gttacatgctgtattctgtgacagaa |
9562846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9570821 - 9570942
Alignment:
| Q |
1 |
acagacaacaacacaaattcatgaaaccttaaacaaaccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
9570821 |
acagacaacaacacaaattcatgaaaccttaaacaaaccaaagtgttggaacagaacatacctcagtatcagactctgaacac---tgagaggttgttca |
9570917 |
T |
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| Q |
101 |
gttacatgctgtgttctgtgacaga |
125 |
Q |
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|||| ||| ||||||||||| |||| |
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| T |
9570918 |
gttaaatgttgtgttctgtggcaga |
9570942 |
T |
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