View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_26 (Length: 251)
Name: NF18847_high_26
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12104449 - 12104689
Alignment:
| Q |
1 |
cacaacattaacattagtatcttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagnnnnnnnttcatgtgag |
100 |
Q |
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| T |
12104449 |
cacaacattaacattagtaccttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagaaaaaaattcatgtgag |
12104548 |
T |
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| Q |
101 |
tagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaat |
200 |
Q |
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| T |
12104549 |
tagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaat |
12104648 |
T |
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| Q |
201 |
ctagttcctactccaaatggaaggaactctccagctctgtg |
241 |
Q |
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| T |
12104649 |
ctagttcctactccaaatggaaggaactctccagctctgtg |
12104689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 12113361 - 12113437
Alignment:
| Q |
150 |
tgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaatctagttcctactccaaatggaaggaa |
226 |
Q |
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| T |
12113361 |
tgaagaaaaactgctatttccattttggcaagatcattgccaggacacaatctagttcctgctccaaagggaaggaa |
12113437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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