View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_27 (Length: 251)
Name: NF18847_high_27
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 38473657 - 38473891
Alignment:
| Q |
14 |
gaccaaatgatacattaaaccaattattaaactcaattattgtcatccgacacaacaacatgatcaccgtccttacgaatgtgtagacgtgacaacccaa |
113 |
Q |
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| T |
38473657 |
gaccaaataatatattaaaccaattattaaactcaattagtgtcatccaacacaacaacatgatcaccgttcttatgaatgtgtagatgtgacaacccaa |
38473756 |
T |
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| Q |
114 |
aatctaattttacacactaacatctgcacatcaataagaaacggagccatgtcattgagacagtgatagacacatctccatgtatatacttggaagaaca |
213 |
Q |
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| T |
38473757 |
aatctaatattt-acattaacatctgcatatcaataaggaacggagccatgtcattgagacagtgatagacacatctccatgtatatacttggaagaaca |
38473855 |
T |
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| Q |
214 |
tcgtgatgttatatatatagaataactccacctatg |
249 |
Q |
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| T |
38473856 |
tcgtgatgttatatatatagaataacaccacctatg |
38473891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41516432 - 41516467
Alignment:
| Q |
1 |
aaataagttaagagaccaaatgatacattaaaccaa |
36 |
Q |
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| T |
41516432 |
aaataagttaagagaccaaatgatatattaaaccaa |
41516467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32894885 - 32894918
Alignment:
| Q |
1 |
aaataagttaagagaccaaatgatacattaaacc |
34 |
Q |
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| T |
32894885 |
aaataagttaagggaccaaatgatacattaaacc |
32894918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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