View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_29 (Length: 250)
Name: NF18847_high_29
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36739640 - 36739399
Alignment:
| Q |
1 |
actgtgatgtctgtaataaacctcccctaaagctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
36739640 |
actgtgatgtctgtaataaaccccccctaaagctgcagtaggtttattaatgttttgactgattgagaataacttttgtttctaagtttctgtcttttat |
36739541 |
T |
|
| Q |
101 |
acacttcttaatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtggttgtagataaactttcccctcggtacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
36739540 |
acacttcttaatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtgatagtagataaactttcccctcggtacttc |
36739441 |
T |
|
| Q |
201 |
ttgaaaaattgacataattgtaaacaagtatctgttcatctc |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36739440 |
ttgaaaaattgacataattgtaaacaagtatctgttcttctc |
36739399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36738013 - 36737900
Alignment:
| Q |
1 |
actgtgatgtctgtaataaacctcccctaaagctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36738013 |
actgtgatgtctgtaataaacctcccctaaagctgcagcaggtttattaatgttttgattgattgagaataactcttgtttctaagtttctgtcttttat |
36737914 |
T |
|
| Q |
101 |
acacttcttaatat |
114 |
Q |
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|||||||||||||| |
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| T |
36737913 |
acacttcttaatat |
36737900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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