View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_30 (Length: 250)
Name: NF18847_high_30
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 37 - 224
Target Start/End: Original strand, 38568526 - 38568713
Alignment:
| Q |
37 |
gacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttgcag |
136 |
Q |
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| T |
38568526 |
gacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttgcag |
38568625 |
T |
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| Q |
137 |
cttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaacaatttctcacaagtttagtgtcttttcttcatatac |
224 |
Q |
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| T |
38568626 |
cttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaacaatttctcacaagtttagtgtcttttcttcatatac |
38568713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 38527222 - 38527409
Alignment:
| Q |
34 |
ccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
133 |
Q |
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| T |
38527222 |
ccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
38527321 |
T |
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| Q |
134 |
cagcttgtctttctcctgtaaccatccaacaactcacctctgaaaatacaaaaacaatttctcacaagtttagtgtcttttcttcatatac |
224 |
Q |
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| T |
38527322 |
cagcttgtctttctcctgttaccatccaacaactcacctctgaaaatac--aaacaa-ttatcataagtttagtgtcttttcttcatatac |
38527409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 5833571 - 5833701
Alignment:
| Q |
34 |
ccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
133 |
Q |
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| T |
5833571 |
ccagacattctaccaattacctctcctgtgtttgtttcagtatcaaagaatgcaatatcctgttgtaatatggttttcaagtacaagctacgaatccttg |
5833670 |
T |
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| Q |
134 |
cagcttgtctttctcctgtaaccatccaaca |
164 |
Q |
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| T |
5833671 |
cagcttgtctttctcctgttaccatccaaca |
5833701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 5764257 - 5764127
Alignment:
| Q |
34 |
ccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
133 |
Q |
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| T |
5764257 |
ccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaagaatgcaatatcctgctttaatatggttttcaagtacaaactacgaatccttg |
5764158 |
T |
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| Q |
134 |
cagcttgtctttctcctgtaaccatccaaca |
164 |
Q |
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| T |
5764157 |
cagattgtctttctcctgtcaccatccaaca |
5764127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 5821085 - 5821051
Alignment:
| Q |
130 |
cttgcagcttgtctttctcctgtaaccatccaaca |
164 |
Q |
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| T |
5821085 |
cttgcagcttgtctttctcctgtcaccatccaaca |
5821051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 51144414 - 51144316
Alignment:
| Q |
37 |
gacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttgca |
135 |
Q |
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||||||||||| ||||| ||||| || | ||||| |||||||||||| | |||||||| || || |||||||| | ||| || ||||| ||||||||| |
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| T |
51144414 |
gacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatcttgcctcaaaattgttttaagatataaccctctaattcttgca |
51144316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 51198072 - 51197930
Alignment:
| Q |
34 |
ccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
133 |
Q |
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|||||||||||||| ||||| ||||| || | ||||| |||||||||||| | |||||||| || || ||||||| | || || | ||| ||||||| |
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| T |
51198072 |
ccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactcacatcttgcctcaaaattgtttggaggtataagcttctgattcttg |
51197973 |
T |
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| Q |
134 |
cagcttgtctttctcctgtaaccatccaacaactcacctctga |
176 |
Q |
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|||| ||||| || || |||| |||||| ||| ||| |||||| |
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| T |
51197972 |
cagcctgtctctcaccggtaatcatccagcaagtcaactctga |
51197930 |
T |
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