View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_33 (Length: 244)
Name: NF18847_high_33
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 12104462 - 12104278
Alignment:
| Q |
1 |
atgttaatgttgtgtcttgctttcacaggttggaacaaatcaacccaaaatctccagtgagattcttgccacacacaaggccaatggacaattgcttggc |
100 |
Q |
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| T |
12104462 |
atgttaatgttgtgtcttgctttcacaggttggaacaaatcaacccaaaatctccagtgagattcttgccacacacaaggccaatggacaattgcttggc |
12104363 |
T |
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| Q |
101 |
aaggatcaagaaacgttcttctgtgtaatcctcagatggaaaaaagacgcatttggagactttacatcaaataataatatcaatg |
185 |
Q |
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| T |
12104362 |
aaggatcaagaaacgttcttcagtgtaatcctcagatggaaaaaagacgcatttggagactttacatcaaataataatatcaatg |
12104278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 12113004 - 12112946
Alignment:
| Q |
60 |
agattcttgccacacacaaggccaatggacaattgcttggcaaggatcaagaaacgttc |
118 |
Q |
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| T |
12113004 |
agatacttaccacatacaaggccaatggacaattgcttaggaagggtcaagaaatgttc |
12112946 |
T |
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