View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_34 (Length: 243)
Name: NF18847_high_34
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 22418265 - 22418056
Alignment:
| Q |
18 |
ataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaatccttctct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22418265 |
ataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaatcctactct |
22418166 |
T |
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| Q |
118 |
aatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggttgatgaactatgaagatg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418165 |
aatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgatttttattttgaagggttgatgaactatgaagatg |
22418066 |
T |
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| Q |
218 |
atgatgatgt |
227 |
Q |
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|||||||||| |
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| T |
22418065 |
atgatgatgt |
22418056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 12813425 - 12813220
Alignment:
| Q |
18 |
ataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaatccttctct |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12813425 |
ataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaattcttctct |
12813326 |
T |
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| Q |
118 |
aatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggttgatgaactatgaagatg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12813325 |
aatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgacttttattttgaagggttgatgaactatgaagatg |
12813226 |
T |
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| Q |
218 |
atgatg |
223 |
Q |
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|||||| |
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| T |
12813225 |
atgatg |
12813220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
172 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
222 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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