View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_4 (Length: 574)
Name: NF18847_high_4
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 7791683 - 7791174
Alignment:
| Q |
18 |
aatggttactattgcaacaacacatcacaatcctatttttcaaatatatataaatcatgacgnnnnnnncactccactcagccttttcttctggggcctt |
117 |
Q |
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| T |
7791683 |
aatggttactattgcaacc---catcacaatcctttttttcaaataaatataaatcatgacgtttttttcactccactcagccttttcttctggggcctt |
7791587 |
T |
|
| Q |
118 |
caacagacaagaacaaaataatttaataaagcttttatgacgaaaacttgaataaaacttggtttagaatatttttaataaatacaacactannnnnnnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
7791586 |
caacagacaagaacaaaataatttaataaagcttttatgacgaaaacttgaataaaacttggtttaaaatatttttaacaaatacaacactatttttttt |
7791487 |
T |
|
| Q |
218 |
nnatcaaaatagtgtgatggttagattttcattcatatcataagatgaataag---tgagatgtttaaagtccatatcagacttccacatgttatatgta |
314 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7791486 |
--atcaaa-tagtgtgatggttagat----attcatatcataagatgaataataaatgagatgtttaaagtccatatcagacttc---atgttatatgta |
7791397 |
T |
|
| Q |
315 |
atatatttgtcaattaaactatgatcactcggataaatacaaactattatcttttatgatcattgtgagttcagctcaactgaacaaggaccaattgagc |
414 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
7791396 |
atatatttgttgattaaactatgatcactcggataaatacaaattattattttttatgatcactgtgagttcagctcaactgagcaaggaccaattgagc |
7791297 |
T |
|
| Q |
415 |
tagttccatattttaattattttttgttttgtttcctatgtttgctttatgaaatgtatccggacagtcatacgctaattattaggatgatgtgtaaggt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
7791296 |
tagttccatattttaattattttttgttttgtttcctatgtttgctttatggaatgtatccggacggtcatacgctaattattaggatgatgtgtaagat |
7791197 |
T |
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| Q |
515 |
taactcctatgattataataaat |
537 |
Q |
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||||||||||||||||||||||| |
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| T |
7791196 |
taactcctatgattataataaat |
7791174 |
T |
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