View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_high_5 (Length: 527)
Name: NF18847_high_5
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 178 - 517
Target Start/End: Original strand, 6392591 - 6392944
Alignment:
| Q |
178 |
ttgagtttatctactagtataagcacttgtgtcaccaaataaaaatacacacttcagactgtttgggagagctt--------------ctcaaaattagt |
263 |
Q |
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| T |
6392591 |
ttgagtttatctactaatataagcacttttgtgaccaaataaaaatacacacttgagactgtttgggagagcttattggggatcgcttctcaaaattagt |
6392690 |
T |
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| Q |
264 |
tttagcttatatcaaatgaggtcttaacttgttcacatacatatctgtgtttttaattttaagtatcataatcataataactagtcattagtggaaaatt |
363 |
Q |
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| T |
6392691 |
tttagcttatatcaaatcaggtcttaacttgttcacatacatatctgtgtttttaattttaagtatcataatcataataactagtcattagtggaaaatt |
6392790 |
T |
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| Q |
364 |
gcgccactgatttggggaaaagtaacagaaaataaaggtgttaaattgctttacatgtaattagtggaagactttccttagaatgaatagatagatagat |
463 |
Q |
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| T |
6392791 |
gcgccactgatttggggaaatttaacagaaaataaaggtgttaaattgctttacatgtaattagtggaagactttccttagaatggatagatagatagat |
6392890 |
T |
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| Q |
464 |
aaatgtcactggtgattaggtttctttatctgtgttttgagttatgtttctgtg |
517 |
Q |
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| T |
6392891 |
aaatgtcactggtgattaggtttctttatctgtgttttgagttatgtttctgtg |
6392944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 6392407 - 6392480
Alignment:
| Q |
19 |
gatctgctcgatttggtgggtcggcgtccgtgtttgccaattgttgtttgttgcagtactcgtgatgaccttga |
92 |
Q |
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| T |
6392407 |
gatctgctcgatttggtgggtcggcgtccgtgtttgccaattgttgtttgttgcagtactcgtgatgaccttga |
6392480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 6392527 - 6392569
Alignment:
| Q |
139 |
gctttggtactattcatcatccctttctcatttaccgtgttga |
181 |
Q |
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| T |
6392527 |
gctttggtactattcatcatccctttctcatttaccgtgttga |
6392569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 44240231 - 44240201
Alignment:
| Q |
178 |
ttgagtttatctactagtataagcacttgtg |
208 |
Q |
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| T |
44240231 |
ttgagtttatctactagtataagcacttgtg |
44240201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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