View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_1 (Length: 638)
Name: NF18847_low_1
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 9 - 620
Target Start/End: Complemental strand, 43695672 - 43695061
Alignment:
| Q |
9 |
gagagagatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695672 |
gagagacatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaa |
43695573 |
T |
|
| Q |
109 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695572 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
43695473 |
T |
|
| Q |
209 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695472 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
43695373 |
T |
|
| Q |
309 |
gagttggagaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgnnnnnnnatctg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43695372 |
gagttggagaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgtttttttatctg |
43695273 |
T |
|
| Q |
409 |
gttaacatactataccttgtttaccatggttgttttttggtttagaagttataaagtggtaggtattcacgacgactattctttcattatgaatatatct |
508 |
Q |
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| T |
43695272 |
gttaacatactataccttgtttaccatggttgttttttggtttagaagttataaagtgttaggtattcacgacgactattctttcattatgaatatatct |
43695173 |
T |
|
| Q |
509 |
tttgatattaagattgcctatgaacggtctgatttatgaaactattatcttgctcaattgcgtatgagaatatactttgttatctgttgtgtatgtgtgt |
608 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695172 |
tttgatattaagattgcctgtgaacggtctgatttatgaaactattatcttgctcaattgcgtatgagaatatactttgttatctgttgtgtatgtgtgt |
43695073 |
T |
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| Q |
609 |
cgtgttagtgct |
620 |
Q |
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|||||||||||| |
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| T |
43695072 |
cgtgttagtgct |
43695061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 43709558 - 43709432
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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|||||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||| || || |||||||||| ||||| |
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| T |
43709558 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
43709459 |
T |
|
| Q |
116 |
taggaattaaaagctatgtggagaaag |
142 |
Q |
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|| |||| ||||| || |||||||||| |
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| T |
43709458 |
taagaatgaaaagttacgtggagaaag |
43709432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 43707834 - 43707708
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||| ||||| |
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| T |
43707834 |
atgaatgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctt |
43707735 |
T |
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| Q |
116 |
taggaattaaaagctatgtggagaaag |
142 |
Q |
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||||||| ||||| | ||||||||||| |
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| T |
43707734 |
taggaatgaaaagttttgtggagaaag |
43707708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 43696443 - 43696407
Alignment:
| Q |
28 |
gcttgtaaggatcttcaagttttatgggaggaacttg |
64 |
Q |
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|||||||||||||||||| |||| ||||||||||||| |
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| T |
43696443 |
gcttgtaaggatcttcaaattttctgggaggaacttg |
43696407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 15827235 - 15827530
Alignment:
| Q |
8 |
cgagagagatgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttca |
107 |
Q |
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||||||| |||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||| || | |||||||| |
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| T |
15827235 |
cgagagacatgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaatcgcatgttca |
15827334 |
T |
|
| Q |
108 |
atctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaag |
207 |
Q |
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| |||||||||||| ||||| || |||||||||| | || | ||||||| ||||||| || ||| | ||||||| ||| || ||||||||| |
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| T |
15827335 |
ctatgctttaggaataaaaagatacatggagaaagctctggaggctgaaaagatgaaggagaacatggtagttttagagcttgaaatggaaaggctaaag |
15827434 |
T |
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| Q |
208 |
gcaaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattggga |
303 |
Q |
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| ||| | |||| ||| | |||||||||||||||||| | ||||||||| ||||| ||| ||||| |||||| ||||||||||||||| |
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| T |
15827435 |
gttaagtcgcttgcagctgagatgaatcttgacatggaaagagacttgttgaaatccaaaggtttcaaagaattagatttagattctgaattggga |
15827530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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