View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_10 (Length: 436)
Name: NF18847_low_10
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 24866305 - 24865885
Alignment:
| Q |
1 |
cgacctgaaaccgggtttcccggtaaacaaagatctcttcagcagcgacgatgaagaagaaaacgacgacgcatcgaatctccaagaattaatccgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24866305 |
cgacctgaaaccgggtttcccggtaaacaaagatctcttcagcagcgacgatgaagaagaaaacgacgacgcatcgaatctccaagaattaatccgaaaa |
24866206 |
T |
|
| Q |
101 |
accaacgcggaagttgaaccgtcaattctcgacccacgcgacgaaggaacgttagataactgggtcacacgaaacgctaccatggtccgtctcacaggga |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24866205 |
accaacgcggaagttgaaccgtcgattctcgacccacgcgacgaaggaacgttagacaactgggtcacacgaaacgctaccatggtccgtctcacaggga |
24866106 |
T |
|
| Q |
201 |
aacaccctttcaattcagaaccaccactcccacgtctcatgcaccacggtttcatcactccagttccaatccactacgtccgtaaccacggtgctgtacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |
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| T |
24866105 |
aacaccctttcaattcagaaccaccactcccacgtctcatgcaccacggtttcatcactccagttccaattcactacgtacgtaaccacggtgctgtccc |
24866006 |
T |
|
| Q |
301 |
aaaagctcgttgggaagattggaccgttgaagtatccggtttagttaaaaacccaacccggttcaccatggaccggctcgttcgtgagtttccaagccgg |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24866005 |
aaaagctcgttgggaagattggactgttgaagtatccggtttagttaaaaacccaacccggttcaccatggaccggctcgttcgtgagtttccaagccgg |
24865906 |
T |
|
| Q |
401 |
gaattacccgtcacacttgtt |
421 |
Q |
| |
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| T |
24865905 |
gaattacccgttacacttgtt |
24865885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 32962300 - 32962195
Alignment:
| Q |
186 |
tccgtctcacagggaaacaccctttcaattcagaaccaccactcccacgtctcatgcaccacggtttcatcactccagttccaatccactacgtccgtaa |
285 |
Q |
| |
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|||||||||| || |||||||| ||||| || || |||||||||| | | |||||||||||||| ||||| ||||| |||||| ||||||| || ||||| |
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| T |
32962300 |
tccgtctcacgggtaaacacccattcaactccgagccaccactccaaagcctcatgcaccacggcttcataactcccgttccactccactatgttcgtaa |
32962201 |
T |
|
| Q |
286 |
ccacgg |
291 |
Q |
| |
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||||| |
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| T |
32962200 |
tcacgg |
32962195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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