View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_11 (Length: 424)
Name: NF18847_low_11
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 49353809 - 49353411
Alignment:
| Q |
10 |
ataattctggacaatccacaattaataaactttcaaggtttgaaaagcaatcggggagcgaaagcaattttgggcaatttataactacaaatctattgaa |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353809 |
ataattctggacaatctacaattaataaactttcaaggtttgaaaagcaatcggggagcgaaagcaattttgggcaatttataactacaaatctattgaa |
49353710 |
T |
|
| Q |
110 |
acaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattca |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353709 |
acaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattca |
49353610 |
T |
|
| Q |
210 |
ggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggatttggttctcattgtggaatgacaatttcaacttagggc |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
49353609 |
ggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactttgggatttggttctcattgtgaaatgaaaatttcaacttatggc |
49353510 |
T |
|
| Q |
310 |
aattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatactcaaccactttaggttagaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49353509 |
aattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaagaaatacccaaccactttaggttagaaa |
49353411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 19031237 - 19031032
Alignment:
| Q |
66 |
agcgaaagcaattttgggcaatttataactacaaatctattgaaacaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaa |
165 |
Q |
| |
|
|||||||||||||| || ||||||| || |||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
19031237 |
agcgaaagcaatttcggacaatttagaataacaagtctattgagacaaataagagttgataaccactcaggaagctcatcaagattttcacagtaaacaa |
19031138 |
T |
|
| Q |
166 |
ttaccaaggtgtttaatgtgtcggcacatcctttcaaccattcaggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagctttaactt |
265 |
Q |
| |
|
|| |||||||| |||||||||| || |||||| |||||||| ||||| ||||||||||| |||||||||| ||||| ||||||||||||| |||||||| |
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| T |
19031137 |
tttgcaaggtgtgtaatgtgtcgacagatccttgcaaccatttaggaatactcacaagttttggcaaagatacaagatttagcaacttcagttttaactt |
19031038 |
T |
|
| Q |
266 |
tgggat |
271 |
Q |
| |
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||||| |
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|
| T |
19031037 |
cgggat |
19031032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 49342387 - 49342162
Alignment:
| Q |
11 |
taattctggacaatccacaattaataaactttcaaggtttgaaaagcaat---------cggggagcgaaagcaattttgggcaatttataactacaaat |
101 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||| |||||| ||||||||| || | || | |
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| T |
49342387 |
taattctggacaatcttcaatttttaaactttcaaggtttggaaggcaatgtaaatcttcggggagcgaaaacaatttcgggcaatttcgaattcgaagt |
49342288 |
T |
|
| Q |
102 |
ctattgaaacaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttca |
201 |
Q |
| |
|
| |||| |||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| | ||||||||| |||||||||| || |
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| T |
49342287 |
attttgagacaaatcagcgttgagaaccactgaggaagctcctctagattttcacagccatcaattaccaaggtttgtaatgtgtctgcacatccttgca |
49342188 |
T |
|
| Q |
202 |
accattcaggaaaactcacaagttgt |
227 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
49342187 |
accattgcggaaaactcacaagttgt |
49342162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 59 - 380
Target Start/End: Original strand, 32782509 - 32782830
Alignment:
| Q |
59 |
atcggggagcgaaagcaattttgggcaatttataactacaaatctattgaaacaaatcatagttgataaccactcaggaagctcatcaagattttcacag |
158 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||| | |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32782509 |
atcggggagcgaaagcaatttcgggcaatttacaattacaagtttattgagacaaatcagagttgataaccactcaggaagctcatcaatattttcacag |
32782608 |
T |
|
| Q |
159 |
ccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattcaggaaaactcacaagttgtggcaaagattcaagacttagcaacttcagct |
258 |
Q |
| |
|
|| ||||| ||||||| | |||||| || |||||| ||| |||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
32782609 |
tcaacaattgccaaggtctgtaatgtatccgcacattcttgcaaccatttaggaatactcacaagttgtggcaaagatcgaagagttagcaacttcagct |
32782708 |
T |
|
| Q |
259 |
ttaactttgggatttggttctcattgtggaatgacaatttcaacttagggcaattagtaatgaacaaccactctaagttgggaataacgtgaagtggcat |
358 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32782709 |
taaactttgggatttggttgtcattgtggaatgacaatttcaacttatggcaattagtaatgaacaaccactctaagttgggaataacatgaagtggcat |
32782808 |
T |
|
| Q |
359 |
agactttagatttccacaagaa |
380 |
Q |
| |
|
|||||||||||| ||||||||| |
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|
| T |
32782809 |
agactttagattcccacaagaa |
32782830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 29752095 - 29751965
Alignment:
| Q |
110 |
acaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattca |
209 |
Q |
| |
|
|||||| | ||||||| ||||||||||||| | ||||||||||||||| | |||| | ||| ||| ||||||||| |||||||||| |||||||| | |
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|
| T |
29752095 |
acaaatgaaagttgatgaccactcaggaagtttctcaagattttcacagtgaccaataaataagctgtgtaatgtgtccgcacatccttgcaaccattga |
29751996 |
T |
|
| Q |
210 |
ggaaaactcacaagttgtggcaaagattcaa |
240 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |
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|
| T |
29751995 |
ggaaaactcaacaattgtggcaaagattcaa |
29751965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 29601199 - 29601329
Alignment:
| Q |
110 |
acaaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattca |
209 |
Q |
| |
|
|||||| | ||||||| ||||||||||||| | ||||||||||||||| | |||| | ||| ||| ||||||||| |||||||||| |||||||| | |
|
|
| T |
29601199 |
acaaatgaaagttgatgaccactcaggaagtttctcaagattttcacagtgaccaataaataagctgtgtaatgtgtccgcacatccttgcaaccattga |
29601298 |
T |
|
| Q |
210 |
ggaaaactcacaagttgtggcaaagattcaa |
240 |
Q |
| |
|
|||||||||| | || |||||| ||||||| |
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|
| T |
29601299 |
ggaaaactcaacaattctggcaaggattcaa |
29601329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 29745040 - 29744906
Alignment:
| Q |
119 |
agttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattcaggaaaactc |
218 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||| || |||| ||||||| ||||||||| |||||||||| ||| ||| |||||||||| |
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|
| T |
29745040 |
agttgatgaccactcaggaagtttctcaagattttcacagtcagcaatagataaggtgtgtaatgtgtctgcacatccttgcaatgattgaggaaaactc |
29744941 |
T |
|
| Q |
219 |
acaagttgtggcaaagattcaagacttagcaactt |
253 |
Q |
| |
|
| | |||||||||||| |||| || ||| ||||| |
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|
| T |
29744940 |
aacaattgtggcaaagaatcaatacatagtaactt |
29744906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 29744880 - 29744791
Alignment:
| Q |
291 |
gacaatttcaacttagggcaattagtaatgaacaaccactctaagttgggaataacgtgaagtggcatagactttagatttccacaagaa |
380 |
Q |
| |
|
||||||||||| ||| ||||||| ||| ||||| | || ||||| |||||||| |||||||||| |||||||||||| | ||||||| |
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|
| T |
29744880 |
gacaatttcaaattattgcaattatcaataaacaaactatccaagtttggaataacatgaagtggcaaagactttagattcctacaagaa |
29744791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 35159214 - 35159088
Alignment:
| Q |
112 |
aaatcatagttgataaccactcaggaagctcatcaagattttcacagccatcaattaccaaggtgtttaatgtgtcggcacatcctttcaaccattcagg |
211 |
Q |
| |
|
||||||||||||| | |||||||||||| || | ||||| ||||| || |||||||||||| | |||||||| || |||||| || ||| ||||| |
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|
| T |
35159214 |
aaatcatagttgacagccactcaggaagatccttaagatggtcacaatcaacaattaccaaggactgtaatgtgttcacagatccttgcagccactcagg |
35159115 |
T |
|
| Q |
212 |
aaaactcacaagttgtggcaaagattc |
238 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
35159114 |
aaaagccagcagttgtggcaaagattc |
35159088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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