View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_13 (Length: 402)
Name: NF18847_low_13
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 402
Target Start/End: Original strand, 37140820 - 37141200
Alignment:
| Q |
22 |
taaacaaaccacctcgattaccaccggtgggcaccgccaacaataataacggttcttatcaactctctttcatgttgtctcttgtgaaaccaagattatt |
121 |
Q |
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| T |
37140820 |
taaacaaaccacctcgattaccaccggtgggcaccgccaacaataataacggttcttatcaactctctttcatgttgtctcttgtgaaaccaagattatt |
37140919 |
T |
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| Q |
122 |
gcccttagctataattgatcagatttttcatgatatatggttggcccaattttcttattttagatataattaatcaatgagtattatatcaaattatcat |
221 |
Q |
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| T |
37140920 |
gcccttagctataattgatcagatttttcatgatatatggttggcccaattttcttattttagatataattaatcaatgagtgatatatcaaattatcat |
37141019 |
T |
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| Q |
222 |
aaagnnnnnnngagttgtaatatcaaagaggacaaagaacattcaaattatcattcgtttgttttgttcgttattatatcttcagtgcaatcgatggaaa |
321 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37141020 |
aaagacaaaaagagttgtaatatcaaagaggacaaagaacattcaaattatcattcgtttgttttgttcgttattatatcttcagtgcaatcgatggaaa |
37141119 |
T |
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| Q |
322 |
taatgacnnnnnnngtttgtcaattattaccaatgattttgtcgatcgaaacgtgaaatgaagcccatgatttatttctta |
402 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37141120 |
gaatgactttttttgtttgtcaattattaccaatgattttgtcgatcgaaacgtgaaatgaagcccatgatttatttctta |
37141200 |
T |
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