View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_15 (Length: 395)
Name: NF18847_low_15
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 146 - 378
Target Start/End: Complemental strand, 25065732 - 25065515
Alignment:
| Q |
146 |
gcagcaatgtaattttgcatcgttaggtaattttcttgctttctgcagcttttccc-tctgagcttttcatgtttcatgaaaaataaagttttagtttca |
244 |
Q |
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| T |
25065732 |
gcagcaatgtaattttgcatcgttaggtaactttcttgctttgtgcagcttttcccctctgagcttttcatgtttcatgaaaaataaagttttggtttca |
25065633 |
T |
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| Q |
245 |
atgttg-tttgctttattaagtaatgatttggtcttggagtaatttgaaatctcttccaagggcagagccatgtgtatcgatgaggtagtcttggctatc |
343 |
Q |
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| T |
25065632 |
atgttgttttgctttattaagtaatgatttagtcttggaggaatctgaaatctcttcca-----------------atcgatgaggtagtcttagctatc |
25065550 |
T |
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| Q |
344 |
ttacagctttgaggaaatcggctcctggtcggaga |
378 |
Q |
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| T |
25065549 |
ttacagctttgaggaaatcggttcctggtcggaga |
25065515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 25065945 - 25065792
Alignment:
| Q |
5 |
gaaaaggtcagacactatgactttgtcggtacaagttcaatgcaagttggtggatatagttggaatatcattaattttcgaca---------tagttctt |
95 |
Q |
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| T |
25065945 |
gaaaaggtcagacactatgactttgtcggtacaagttcaatgcaagttggtggatatagttggaatatcattaattttcgacatatcaatgctagttcgt |
25065846 |
T |
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| Q |
96 |
tcattcaattttgcaagtttgataatttgatttcttatgatgtatttcctgcag |
149 |
Q |
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| T |
25065845 |
tcattcaattttgcaagtttgatcatttgatttcttatgatgtatttcctgcag |
25065792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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