View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_16 (Length: 392)
Name: NF18847_low_16
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 5022301 - 5021941
Alignment:
| Q |
19 |
ggtttttcttcagagtccacttcaagtttcagtttctttgatatgtatcgacttttgtcatgtagcaattcacgatctacttcagcaattatttgttcat |
118 |
Q |
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| T |
5022301 |
ggtttttcttcagagtccacttcaagtttccgtttctttgatatgtatcgacttttgtcatgtagcaattcacgatctacttcagcaattatttgttcat |
5022202 |
T |
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| Q |
119 |
caatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgattatacgtgtcatggttcgaattgaaaaatatgattcattgtcaccagttgt |
218 |
Q |
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| T |
5022201 |
caatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgattatacgtgtcatggttcgaattgaaaaatatgattcattgtcaccagttgt |
5022102 |
T |
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| Q |
219 |
aatcggaaatcttttcttgagaactccaaaagctccatcaatcacattttgaagtaaagcatgacgaaatttgaatagttcttgataattttgaggtccc |
318 |
Q |
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| T |
5022101 |
aatcggaaatcttttcttgagaactccaaaagctccatcaatcacattttgaagtaaagcatgacgaaatttgaatagttcttgataattttgaggtccc |
5022002 |
T |
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| Q |
319 |
tgagttgaatactgcttcaagcaataacaaacacctctatatggtgtcagcaccacaggtt |
379 |
Q |
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| T |
5022001 |
tgagttgaatactgcttcaagcaataacagacacctctatatggtgtcagcaccccaggtt |
5021941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 5019511 - 5019430
Alignment:
| Q |
92 |
gatctacttcagcaattatttgttcatcaatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgattatacg |
173 |
Q |
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| T |
5019511 |
gatctacttcagcaatcatttgttcgtcaatgtcaacttccataagaaagttatgcaaaacacaacaagcaatgattatacg |
5019430 |
T |
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