View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_2 (Length: 625)
Name: NF18847_low_2
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 6801791 - 6801353
Alignment:
| Q |
16 |
aaagtgactctaggggaagtcagtttaattatctcattattttgttttatagcatcaagaaaattaaaca-aggttaaccacttttcttaatctatgtaa |
114 |
Q |
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| T |
6801791 |
aaagtgactctaggagaagtcagtttaattttctcattattttgttttatagcatcaagaaaattaaacagaggttaaccacttttcataatctatgtaa |
6801692 |
T |
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| Q |
115 |
atgtagttttcttggtacttaaatcaatcatttaaaggtgttgtttttaagtctcaaagtgcactgtgttggacnnnnnnn-cagtttctgtttaagcta |
213 |
Q |
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| T |
6801691 |
aagtatttttcttgggacttaaattaatcattcaaaggtgttgtttttaaggctcaatgtgcattgtgttggtcttttttttcagtttctgtttaagctg |
6801592 |
T |
|
| Q |
214 |
taacgatttttaagaaagctgttaccaattatgtaaactcgcgtagatgatctgtttaagcacatatagttcttcagagtggattcaattttgtattgag |
313 |
Q |
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| T |
6801591 |
taaccatttgtaagcaagctgttaccaattatgtaaactggcgtatatgatctatttaaggacatatagt-cttcagagtggattcaattttgtattgag |
6801493 |
T |
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| Q |
314 |
ttgtgtgatataaatcacatatattaagaaactgagaaccatggtcatatcattatatagttccttcttcccaagagaataatggtaaaaactctgttta |
413 |
Q |
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| T |
6801492 |
ttgtgtgatataaatcacatatattaagatactgagaaccatggtcatatcattatatagttccttcttcccaagagaataatggtaaaaactttgttta |
6801393 |
T |
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| Q |
414 |
tgaatgtatagtatgtagtaccatacaaatcttgaatctt |
453 |
Q |
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| T |
6801392 |
tgaatgtatagtaagtagtaccatacaaatcttgaatctt |
6801353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 27 - 553
Target Start/End: Complemental strand, 6483804 - 6483301
Alignment:
| Q |
27 |
aggggaagtcagtttaattatctcattattttgttttatagcatcaagaaaattaaacaaggttaaccacttttcttaatctatgtaaatgtagttttct |
126 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |
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| T |
6483804 |
agggtaagtcagtttaattttctcattattttgttttatagcatcaagaaaattaaacaagggtaaccacttttcttaatctatgtaaaagtagttttgt |
6483705 |
T |
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| Q |
127 |
tggtacttaaatcaatcatttaaaggtgttgtttttaagtctcaaagtgcactgtgttggacnnnnnnncagtttctgtttaagctataacgatttttaa |
226 |
Q |
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| T |
6483704 |
tgggacttaaattaatcatttacaggtgttgttcttaagtctcaatgtgcactgtgttggactttttttcagtttctgtttaagctataacgatttggaa |
6483605 |
T |
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| Q |
227 |
gaaagctgttaccaattatgtaaactcgcgtagatgatctgtttaagcacatatagttcttcagagtggattcaattttgtattgagttgtgtgatataa |
326 |
Q |
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| T |
6483604 |
gcaagctgttaccaattatgtaa----gcgtagatgatctatttatggacatatagttattcagagtggattcaattttgtattaacgtgtgtgatacaa |
6483509 |
T |
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| Q |
327 |
atcacatatattaagaaactgagaaccatggtcatatcattatatagttccttcttcccaagagaataatggtaaaaactctgtttatgaatgtatagta |
426 |
Q |
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| T |
6483508 |
atcacatat-----------------catggtc--atcattatatagttccttctccttgagagaataatggtaaaaattgtgtttatgaatgtatagta |
6483428 |
T |
|
| Q |
427 |
tgtagtaccatacaaatcttgaatcttgaatcttcagatttcactgtcaaaatgatatttaaccaaaaggtagttatattctttatgcgaaaatgttctc |
526 |
Q |
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| T |
6483427 |
agtagtaccatacaaatcttgaatcatgaatcttcagattttagtgtcaaaaggacatttaaccaaaaggtaattagaatctgtatgagaaaatgttctc |
6483328 |
T |
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| Q |
527 |
aaatgccatcttatcaaaatccttcca |
553 |
Q |
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| T |
6483327 |
aaataccgtattatcaaaagccttcca |
6483301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 553
Target Start/End: Complemental strand, 6801041 - 6800966
Alignment:
| Q |
478 |
atgatatttaaccaaaaggtagttatattctttatgcgaaaatgttctcaaatgccatcttatcaaaatccttcca |
553 |
Q |
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| T |
6801041 |
atgatatttaaccaaaaggtaattagaatctgtttgggaaaatgttctcaaatgccatattatcaaaagccttcca |
6800966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 36403952 - 36403996
Alignment:
| Q |
68 |
catcaagaaaattaaacaaggttaaccacttttcttaatctatgt |
112 |
Q |
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| T |
36403952 |
catcaagaaaattaaacgaggttaactatttatcttaatctatgt |
36403996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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