View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18847_low_20 (Length: 323)

Name: NF18847_low_20
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18847_low_20
NF18847_low_20
[»] chr7 (4 HSPs)
chr7 (158-306)||(25690796-25690944)
chr7 (81-177)||(25690639-25690735)
chr7 (109-202)||(21346447-21346540)
chr7 (162-222)||(16780837-16780897)
[»] chr8 (2 HSPs)
chr8 (160-248)||(34273045-34273133)
chr8 (195-247)||(959989-960041)
[»] scaffold0110 (1 HSPs)
scaffold0110 (160-248)||(31311-31399)
[»] chr1 (2 HSPs)
chr1 (161-248)||(31847321-31847408)
chr1 (162-248)||(32191217-32191303)
[»] chr2 (1 HSPs)
chr2 (217-253)||(28314574-28314610)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 25690796 - 25690944
Alignment:
Q  158 catgagttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaattatttttccg 257  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25690796 catgaattaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaattatttttccc 25690895  T
Q  258 aactcttccatggttgataagctgaagccttgttttgattaagccatat 306  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25690896 aactcttccatggttggtaagctgaagccttgttttgattaagccatat 25690944  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 25690639 - 25690735
Alignment:
Q  81 aggcccatataataccagcctccaactcttgaaaattgctcctctccctttccaaattactaattcctctaactcaacatgagttaactcacgctga 177  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25690639 aggcccatatcataccagcctccaactcttgaaaattgctcctctccctttccaaattactaattcctctaactcaacatgagttaactcacgctga 25690735  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 21346540 - 21346447
Alignment:
Q  109 ttgaaaattgctcctctccctttccaaattactaattcctctaactcaacatgagttaactcacgctgaaaaaagtcaagcagaaattaactca 202  Q
    ||||||||||||| |||  |||||  ||||||| |||||  ||||| |  ||||||||||||||||||||||| ||| ||| | | ||||||||    
T  21346540 ttgaaaattgctcttcttactttcataattactcattccattaacttattatgagttaactcacgctgaaaaatgtcgagcgggagttaactca 21346447  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 16780837 - 16780897
Alignment:
Q  162 agttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgag 222  Q
    |||||||||| ||||||||| ||| ||||  | |||||||||| ||||| |||||||||||    
T  16780837 agttaactcatgctgaaaaatgtcgagcatgagttaactcatgttgaattaaggaaatgag 16780897  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 34273133 - 34273045
Alignment:
Q  160 tgagttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 248  Q
    |||||||| ||||||||||||| | | ||||||| |||||||| ||||| | ||||||||||| |||||| |||||||||||| |||||    
T  34273133 tgagttaattcacgctgaaaaatgccgagcagaagttaactcacgctgagttaaggaaatgagcaattttaaaagggagaagagcaatt 34273045  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 960041 - 959989
Alignment:
Q  195 ttaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaat 247  Q
    |||||| ||||||||| |||  ||||||||||||||||||| |||| ||||||    
T  960041 ttaactgatgctgaattaagataatgagtaattttgaaaggaagaaaaacaat 959989  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 31399 - 31311
Alignment:
Q  160 tgagttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 248  Q
    |||||||||||||||||||||| | | | |   | |||||||||||||||| |||  |||||| |||||||||||| |||||| |||||    
T  31399 tgagttaactcacgctgaaaaatgccgaacgtgagttaactcatgctgaattaagagaatgagcaattttgaaaggaagaagagcaatt 31311  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 31847408 - 31847321
Alignment:
Q  161 gagttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 248  Q
    ||||||||||||||||||||| ||| |||  || ||||||  |||||  | || | |||||| ||||||||||||||||||| |||||    
T  31847408 gagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaattttgaaagggagaagagcaatt 31847321  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 32191217 - 32191303
Alignment:
Q  162 agttaactcacgctgaaaaaagtcaagcagaaattaactcatgctgaatgaaggaaatgagtaattttgaaagggagaagaacaatt 248  Q
    |||||||||||||||||||| ||| | |   | |||||||||||||| | |||  ||||||||||||| | |||||||||| |||||    
T  32191217 agttaactcacgctgaaaaatgtcgaacgagagttaactcatgctgagttaagagaatgagtaattttaagagggagaagagcaatt 32191303  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 28314610 - 28314574
Alignment:
Q  217 aatgagtaattttgaaagggagaagaacaattatttt 253  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28314610 aatgaataattttgaaagggagaagaacaattttttt 28314574  T

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