View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18847_low_24 (Length: 282)

Name: NF18847_low_24
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18847_low_24
NF18847_low_24
[»] chr4 (32 HSPs)
chr4 (86-265)||(14041344-14041523)
chr4 (86-265)||(14033819-14033998)
chr4 (1-52)||(23501746-23501797)
chr4 (1-51)||(6430756-6430806)
chr4 (1-51)||(10660358-10660408)
chr4 (1-51)||(10874503-10874553)
chr4 (1-51)||(20224938-20224988)
chr4 (1-51)||(48598954-48599004)
chr4 (1-46)||(14590796-14590841)
chr4 (1-52)||(11054277-11054328)
chr4 (1-52)||(47528659-47528710)
chr4 (1-51)||(5306794-5306844)
chr4 (1-51)||(5648213-5648263)
chr4 (1-51)||(30639334-30639384)
chr4 (1-46)||(16911521-16911566)
chr4 (1-46)||(17315429-17315474)
chr4 (1-53)||(13256528-13256580)
chr4 (1-45)||(21646924-21646968)
chr4 (1-44)||(16408734-16408777)
chr4 (8-46)||(18969700-18969738)
chr4 (1-51)||(20405047-20405097)
chr4 (1-46)||(5313125-5313170)
chr4 (1-46)||(30352722-30352767)
chr4 (1-52)||(37494804-37494855)
chr4 (1-44)||(54966983-54967025)
chr4 (8-51)||(55766604-55766647)
chr4 (9-51)||(55830860-55830902)
chr4 (1-32)||(44363263-44363294)
chr4 (1-42)||(487266-487306)
chr4 (8-40)||(8473758-8473790)
chr4 (7-51)||(29879634-29879678)
chr4 (1-41)||(30496451-30496491)
[»] chr3 (28 HSPs)
chr3 (1-57)||(10870082-10870138)
chr3 (1-56)||(13730735-13730790)
chr3 (1-51)||(8247820-8247870)
chr3 (1-52)||(46421168-46421219)
chr3 (1-51)||(7697016-7697066)
chr3 (1-51)||(9607179-9607229)
chr3 (1-51)||(40272943-40272993)
chr3 (1-51)||(52926341-52926391)
chr3 (6-51)||(16735417-16735462)
chr3 (1-45)||(25517304-25517348)
chr3 (1-52)||(12914166-12914217)
chr3 (1-51)||(1217066-1217116)
chr3 (1-51)||(4495795-4495845)
chr3 (1-51)||(39203492-39203542)
chr3 (5-46)||(21875001-21875042)
chr3 (1-46)||(22123046-22123091)
chr3 (1-38)||(26869696-26869733)
chr3 (1-46)||(29366853-29366898)
chr3 (1-51)||(5173851-5173902)
chr3 (1-51)||(13628923-13628974)
chr3 (5-51)||(6411956-6412002)
chr3 (1-51)||(22609743-22609792)
chr3 (12-51)||(9276250-9276289)
chr3 (11-46)||(23871420-23871455)
chr3 (1-42)||(26573113-26573153)
chr3 (1-42)||(45620960-45621000)
chr3 (1-51)||(12525386-12525433)
chr3 (1-29)||(53062036-53062064)
[»] chr1 (42 HSPs)
chr1 (1-54)||(22930198-22930251)
chr1 (1-52)||(18944619-18944670)
chr1 (1-51)||(34725227-34725277)
chr1 (1-46)||(18742092-18742137)
chr1 (1-46)||(40424724-40424769)
chr1 (1-52)||(32632687-32632738)
chr1 (1-52)||(45812666-45812717)
chr1 (1-52)||(47214487-47214538)
chr1 (1-51)||(14617015-14617065)
chr1 (1-43)||(19932883-19932925)
chr1 (1-51)||(34714600-34714650)
chr1 (1-46)||(25290145-25290190)
chr1 (3-51)||(46248086-46248134)
chr1 (9-52)||(10668196-10668239)
chr1 (1-52)||(20004223-20004274)
chr1 (1-52)||(38478411-38478462)
chr1 (1-51)||(8197020-8197070)
chr1 (1-51)||(27474258-27474308)
chr1 (7-45)||(30395865-30395903)
chr1 (1-51)||(41319937-41319987)
chr1 (1-51)||(46991781-46991831)
chr1 (9-46)||(45402077-45402114)
chr1 (1-41)||(33222971-33223011)
chr1 (1-51)||(27201624-27201674)
chr1 (1-45)||(9939443-9939488)
chr1 (1-46)||(19414421-19414466)
chr1 (1-46)||(23768451-23768496)
chr1 (86-146)||(1084085-1084145)
chr1 (1-41)||(4430157-4430197)
chr1 (1-45)||(12126966-12127010)
chr1 (1-41)||(18724676-18724715)
chr1 (1-41)||(20036208-20036247)
chr1 (6-46)||(21723646-21723686)
chr1 (10-53)||(10163734-10163777)
chr1 (1-42)||(2435918-2435958)
chr1 (1-42)||(6983940-6983980)
chr1 (1-46)||(18335419-18335464)
chr1 (1-46)||(21006126-21006171)
chr1 (1-42)||(22327086-22327126)
chr1 (3-44)||(28894664-28894704)
chr1 (1-42)||(50811926-50811966)
chr1 (1-42)||(52910204-52910244)
[»] chr8 (27 HSPs)
chr8 (1-53)||(12670379-12670431)
chr8 (1-51)||(30454226-30454276)
chr8 (1-45)||(20869627-20869671)
chr8 (1-53)||(35261631-35261683)
chr8 (1-52)||(7136660-7136711)
chr8 (1-52)||(24245404-24245455)
chr8 (1-51)||(39461127-39461177)
chr8 (7-54)||(44530100-44530147)
chr8 (1-51)||(2626473-2626523)
chr8 (1-51)||(13160656-13160706)
chr8 (1-51)||(17823530-17823580)
chr8 (1-51)||(28817757-28817807)
chr8 (1-51)||(36720750-36720800)
chr8 (1-46)||(20284204-20284249)
chr8 (1-46)||(21070833-21070878)
chr8 (1-46)||(25250481-25250526)
chr8 (1-42)||(28407379-28407420)
chr8 (1-53)||(29521816-29521868)
chr8 (8-51)||(23286431-23286474)
chr8 (9-56)||(45071214-45071261)
chr8 (1-51)||(18164890-18164940)
chr8 (9-51)||(40605044-40605086)
chr8 (8-48)||(8897902-8897942)
chr8 (7-41)||(6760786-6760820)
chr8 (14-52)||(42840862-42840900)
chr8 (13-41)||(5688801-5688829)
chr8 (2-42)||(44781638-44781677)
[»] chr2 (28 HSPs)
chr2 (1-53)||(12024049-12024101)
chr2 (1-51)||(14530272-14530322)
chr2 (1-45)||(27573581-27573625)
chr2 (1-52)||(8455447-8455498)
chr2 (1-55)||(7214484-7214538)
chr2 (1-51)||(21779390-21779440)
chr2 (1-51)||(23397720-23397770)
chr2 (1-51)||(25079849-25079899)
chr2 (2-52)||(27466262-27466312)
chr2 (5-51)||(39189556-39189602)
chr2 (1-46)||(10543657-10543702)
chr2 (1-46)||(11514395-11514440)
chr2 (1-46)||(14544022-14544067)
chr2 (6-51)||(9671134-9671179)
chr2 (1-46)||(17896218-17896263)
chr2 (6-51)||(22371011-22371056)
chr2 (1-46)||(25249868-25249913)
chr2 (7-51)||(17705449-17705493)
chr2 (3-46)||(24200758-24200801)
chr2 (1-51)||(26684753-26684803)
chr2 (9-55)||(39499353-39499399)
chr2 (1-46)||(19977845-19977890)
chr2 (1-41)||(24860117-24860157)
chr2 (1-51)||(5840982-5841032)
chr2 (1-39)||(39914437-39914475)
chr2 (1-42)||(4516482-4516522)
chr2 (1-34)||(17667973-17668006)
chr2 (1-29)||(21377204-21377232)
[»] chr7 (43 HSPs)
chr7 (1-52)||(47077984-47078035)
chr7 (1-51)||(32758215-32758265)
chr7 (1-51)||(48735252-48735302)
chr7 (1-53)||(22699101-22699153)
chr7 (3-46)||(14732955-14732998)
chr7 (1-52)||(21172138-21172189)
chr7 (1-52)||(42798622-42798673)
chr7 (1-52)||(43557425-43557476)
chr7 (1-51)||(42495966-42496016)
chr7 (6-51)||(2541156-2541201)
chr7 (1-46)||(5180288-5180333)
chr7 (1-45)||(35334945-35334989)
chr7 (9-53)||(46354146-46354190)
chr7 (1-44)||(10693202-10693245)
chr7 (1-44)||(11617719-11617762)
chr7 (7-46)||(18326993-18327032)
chr7 (1-51)||(7193039-7193089)
chr7 (1-51)||(34626338-34626388)
chr7 (1-51)||(42805478-42805528)
chr7 (1-46)||(29140491-29140536)
chr7 (2-46)||(25198681-25198725)
chr7 (1-45)||(40463837-40463881)
chr7 (1-40)||(19427020-19427059)
chr7 (1-43)||(27629596-27629638)
chr7 (1-51)||(42476827-42476877)
chr7 (6-51)||(2663067-2663112)
chr7 (1-42)||(3469310-3469350)
chr7 (1-46)||(7794637-7794682)
chr7 (1-42)||(13805066-13805106)
chr7 (1-45)||(1424041-1424085)
chr7 (6-46)||(8149082-8149122)
chr7 (1-51)||(12473258-12473308)
chr7 (1-51)||(28078262-28078312)
chr7 (1-31)||(33872040-33872070)
chr7 (1-51)||(47716413-47716463)
chr7 (1-42)||(19266414-19266454)
chr7 (1-42)||(28362276-28362316)
chr7 (2-35)||(28685266-28685299)
chr7 (1-46)||(45019007-45019052)
chr7 (1-29)||(14099137-14099165)
chr7 (1-29)||(14409154-14409182)
chr7 (11-51)||(21447544-21447584)
chr7 (3-39)||(39123857-39123892)
[»] chr5 (22 HSPs)
chr5 (1-52)||(1565384-1565435)
chr5 (1-51)||(38879535-38879585)
chr5 (1-46)||(43334161-43334206)
chr5 (1-51)||(24448844-24448894)
chr5 (1-51)||(35710267-35710317)
chr5 (1-51)||(37024685-37024735)
chr5 (1-51)||(41014273-41014323)
chr5 (1-46)||(4619237-4619282)
chr5 (1-45)||(8170113-8170157)
chr5 (2-52)||(19438702-19438752)
chr5 (1-46)||(22861797-22861842)
chr5 (1-46)||(27328711-27328756)
chr5 (6-46)||(2838737-2838777)
chr5 (7-46)||(31299591-31299630)
chr5 (1-51)||(22187239-22187289)
chr5 (1-51)||(23974735-23974784)
chr5 (1-45)||(30006285-30006329)
chr5 (1-40)||(12006461-12006500)
chr5 (1-51)||(22600408-22600458)
chr5 (13-51)||(41956886-41956924)
chr5 (1-42)||(39079897-39079937)
chr5 (1-42)||(39301087-39301127)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-51)||(30533-30583)
[»] scaffold0057 (2 HSPs)
scaffold0057 (1-51)||(24898-24948)
scaffold0057 (7-42)||(46794-46829)
[»] chr6 (22 HSPs)
chr6 (1-51)||(1346918-1346968)
chr6 (1-51)||(1354886-1354936)
chr6 (3-46)||(3815210-3815253)
chr6 (1-51)||(8409197-8409247)
chr6 (1-46)||(24734592-24734637)
chr6 (1-41)||(12222048-12222088)
chr6 (1-56)||(20400616-20400671)
chr6 (3-52)||(33922961-33923010)
chr6 (1-45)||(14975211-14975255)
chr6 (1-44)||(13905110-13905152)
chr6 (2-41)||(19649299-19649338)
chr6 (1-51)||(1941809-1941859)
chr6 (1-51)||(9161077-9161127)
chr6 (1-51)||(15866168-15866218)
chr6 (9-65)||(6024173-6024229)
chr6 (3-35)||(8417442-8417474)
chr6 (1-51)||(29355988-29356039)
chr6 (1-46)||(2166543-2166587)
chr6 (1-46)||(2178176-2178220)
chr6 (7-40)||(14553477-14553510)
chr6 (1-46)||(32728287-32728332)
chr6 (1-29)||(2755555-2755583)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-46)||(226537-226582)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-59)||(13154-13212)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-51)||(83829-83879)
[»] scaffold0187 (4 HSPs)
scaffold0187 (1-46)||(10179-10224)
scaffold0187 (1-46)||(20507-20552)
scaffold0187 (3-51)||(8899-8947)
scaffold0187 (3-51)||(19227-19275)
[»] scaffold1176 (1 HSPs)
scaffold1176 (1-43)||(1716-1758)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-47)||(58935-58981)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-42)||(10773-10814)
[»] scaffold0018 (1 HSPs)
scaffold0018 (10-43)||(73001-73034)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-44)||(11093-11135)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-46)||(4117-4161)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-37)||(43097-43133)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 86 - 265
Target Start/End: Original strand, 14041344 - 14041523
Alignment:
Q  86 tattacacagaaaagattacaaggaaaataagcatgaagatagtaatagcttgcagtacaagttacaatagatgtagaacaatagttaagtttcagtagt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14041344 tattacacagaaaagattacaaggaaaataagcatgaagatagtaatagcttgcagtacaagttacaatagatgtagtacaatagttaagtttcagtagt 14041443  T
Q  186 gcaatgatattgtatatatacttgatgtactaaactttccagatcaatgaatcatttcactcttttatcatattcttaat 265  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14041444 acaatgatattgtatatatacttgatgtactaaactttccagatcaatgaatcatttcactcttttatcatattcttaat 14041523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 86 - 265
Target Start/End: Original strand, 14033819 - 14033998
Alignment:
Q  86 tattacacagaaaagattacaaggaaaataagcatgaagatagtaatagcttgcagtacaagttacaatagatgtagaacaatagttaagtttcagtagt 185  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  14033819 tattacacaaaaaagattacaaggaaaataagcatgaagatagtaatagcttgcagtacaagttacaacagatgtagtacaatagttaagtttcagtagt 14033918  T
Q  186 gcaatgatattgtatatatacttgatgtactaaactttccagatcaatgaatcatttcactcttttatcatattcttaat 265  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033919 acaatgatattgtatatatacttgatgtactcaactttccagatcaatgaatcatttcactcttttatcatattcttaat 14033998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23501797 - 23501746
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23501797 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctct 23501746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6430756 - 6430806
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6430756 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 6430806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10660408 - 10660358
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10660408 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 10660358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10874553 - 10874503
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10874553 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 10874503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20224988 - 20224938
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20224988 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 20224938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48598954 - 48599004
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48598954 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 48599004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14590841 - 14590796
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14590841 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 14590796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11054277 - 11054328
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11054277 cctttcagtcacatgacaacaactttaccagttgcgccaaagttacccctct 11054328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47528659 - 47528710
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  47528659 cctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctct 47528710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5306794 - 5306844
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5306794 cctttcagtcacatgacatcaactttaccagttgcgccaaggttacccctc 5306844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5648263 - 5648213
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5648263 ccttacagtcacatgacaacaactttaccagttgcgccaaggttacccctc 5648213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30639384 - 30639334
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  30639384 cctttcagtcacaagacaacaactttaccagttgcgccaaggttacccctc 30639334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16911566 - 16911521
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  16911566 cctttaagtcacatgacaacaactttaccagttgcgccaaggttac 16911521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17315429 - 17315474
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  17315429 cctttcagtcacatgacaacaactttaccggttgcgccaaggttac 17315474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13256528 - 13256580
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||||    
T  13256528 ccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctcta 13256580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21646968 - 21646924
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  21646968 ccttccagtcacatgacaacaactttaccagttgcgccaaggtta 21646924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16408734 - 16408777
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  16408734 ccttccagtcacatgacaacaactttaccagttgcgccaaggtt 16408777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 18969738 - 18969700
Alignment:
Q  8 gtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18969738 gtcacatgacaacaactttaccagttgcgccaaggttac 18969700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20405097 - 20405047
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  20405097 ccttccagtcacatgacaacaactttaccagttgcgtcaaggttacccctc 20405047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5313125 - 5313170
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5313125 cctttcaatcacatgacaacaactttaccagttacgccaaggttac 5313170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30352722 - 30352767
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||    
T  30352722 cctttcggtcacttgacaacaactttaccagttgcgccaaggttac 30352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37494855 - 37494804
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||| |||||    
T  37494855 cctttcagtcgcatggcaacaactttaccagttgcaccaaggttacccctct 37494804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 54967025 - 54966983
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  54967025 cctttcagtcacatgacaacaactttacc-gttgcgccaaggtt 54966983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 55766604 - 55766647
Alignment:
Q  8 gtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  55766604 gtcacatgacaacaactttaccagttgcgtcaaggttacccctc 55766647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 55830860 - 55830902
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  55830860 tcacatgacaacaactttaccagttgcgtcaaggttacccctc 55830902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 44363263 - 44363294
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagt 32  Q
    ||||||||||||||||||||||||||||||||    
T  44363263 cctttcagtcacatgacaacaactttaccagt 44363294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 487266 - 487306
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  487266 cctttcagtcacatgacaacaactttacc-gttacgccaagg 487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 8473758 - 8473790
Alignment:
Q  8 gtcacatgacaacaactttaccagttgcgccaa 40  Q
    |||| ||||||||||||||||||||||||||||    
T  8473758 gtcatatgacaacaactttaccagttgcgccaa 8473790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 29879634 - 29879678
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||||    
T  29879634 agtcacatgacaacaactttatcagttgcaccaatgttacccctc 29879678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30496451 - 30496491
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  30496451 cctttcagtcacgtgacaacaacttttacagttgcgccaag 30496491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10870082 - 10870138
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctataat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10870082 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctctataat 10870138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13730735 - 13730790
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctataa 56  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13730735 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctctataa 13730790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8247820 - 8247870
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8247820 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 8247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46421168 - 46421219
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  46421168 cctttaagtcacatgacaacaactttaccagttgcgccaaggttacccctct 46421219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7697016 - 7697066
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  7697016 ccttttagtcacatgacaacaactttaccagttgcgccaaggttacccctc 7697066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9607229 - 9607179
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  9607229 cctttcagtcacatgacaacaactttacaagttgcgccaaggttacccctc 9607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40272943 - 40272993
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40272943 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 40272993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52926341 - 52926391
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  52926341 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 52926391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 16735462 - 16735417
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16735462 cagtcacatgacaacaactttaccagttgcgccaaggttacccctc 16735417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25517304 - 25517348
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  25517304 ccttccagtcacatgacaacaactttaccagttgcgccaaggtta 25517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12914166 - 12914217
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  12914166 cctttcggtcacattacaacaactttaccagttgcgccaaggttacccctct 12914217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1217116 - 1217066
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  1217116 cctttcagtgacatgactacaactttaccagttgcgccaaggttacccctc 1217066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4495795 - 4495845
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  4495795 ccttccagtcacatgacaacaactttaccagttgcgcgaaggttacccctc 4495845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39203542 - 39203492
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  39203542 cctttcagtcacatgacaacaactttacaagttgtgccaaggttacccctc 39203492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 21875042 - 21875001
Alignment:
Q  5 tcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  21875042 tcagtcacatgacaacaactttaccagttgcgtcaaggttac 21875001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22123046 - 22123091
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  22123046 cctttcagtcacatgacaacaaatttaccagtggcgccaaggttac 22123091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26869733 - 26869696
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26869733 cctttcagtcacatgacaacaactttaccagttgcgcc 26869696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29366853 - 29366898
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  29366853 ccttttagtcacatgacaacaactttaccagttacgccaaggttac 29366898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5173851 - 5173902
Alignment:
Q  1 cctttcagtcacatgacaacaac-tttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  5173851 cctttcagtcacatgacaacaacttttacgagttgcgccaaggttacccctc 5173902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13628923 - 13628974
Alignment:
Q  1 cctttcagtcacatgacaacaac-tttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  13628923 cctttcagtcacatgacaacaacttttaccagttgtgccaaggttacccctc 13628974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 6411956 - 6412002
Alignment:
Q  5 tcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  6411956 tcagttacatgacaacaactttaccagttgcgtcaaggttacccctc 6412002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22609792 - 22609743
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  22609792 ccttacagtcacatgacaacaactttacc-gttgcgccaaggttacccctc 22609743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 9276289 - 9276250
Alignment:
Q  12 catgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  9276289 catgacaacaactttactagttgcgccaaggttacccctc 9276250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 23871455 - 23871420
Alignment:
Q  11 acatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||| |||||||||||||||||    
T  23871455 acatgacaacaactttactagttgcgccaaggttac 23871420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26573153 - 26573113
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  26573153 cctttcagtcacgtgacaacaactttacc-gttgcgccaagg 26573113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45620960 - 45621000
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  45620960 cctttcagtcacgtgacaacaactttacc-gttgcgccaagg 45621000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12525433 - 12525386
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||| |||   |||||||||||||||||||||||||||| ||||    
T  12525433 cctttcagtcatatg---acaactttaccagttgcgccaaggttacccctc 12525386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 53062064 - 53062036
Alignment:
Q  1 cctttcagtcacatgacaacaactttacc 29  Q
    |||||||||||||||||||||||||||||    
T  53062064 cctttcagtcacatgacaacaactttacc 53062036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22930198 - 22930251
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctat 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22930198 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctctat 22930251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18944670 - 18944619
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18944670 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctct 18944619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34725227 - 34725277
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34725227 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 34725277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18742092 - 18742137
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18742092 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 18742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40424769 - 40424724
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40424769 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 40424724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32632687 - 32632738
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  32632687 cctttcagtcatatgacaacaactttaccagttgcgccaaggttacccctct 32632738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45812666 - 45812717
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  45812666 cctttcagtcacatgacaacaactttatcagttgcgccaaggttacccctct 45812717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47214538 - 47214487
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  47214538 cctttcagtcacatgacaacaactttaccagttgcgccaaagttacccctct 47214487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14617065 - 14617015
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  14617065 cctttcagtcacatgacaacaactttaccggttgcgccaaggttacccctc 14617015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19932883 - 19932925
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggt 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19932883 cctttcagtcacatgacaacaactttaccagttgcgccaaggt 19932925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34714650 - 34714600
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  34714650 cctttcaatcacatgacaacaactttaccagttgcgccaaggttacccctc 34714600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25290190 - 25290145
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25290190 cctttcagtcacatgacaacaactttacctgttgcgccaaggttac 25290145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 46248086 - 46248134
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  46248086 tttcagtcacatgacaacaactttaccagttgagccaaggttacccctc 46248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 10668239 - 10668196
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  10668239 tcacatgacaacaactttaccagttgcgccaaggttacccctct 10668196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20004223 - 20004274
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  20004223 ccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctct 20004274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38478411 - 38478462
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  38478411 cctttcagtcacatgacaacaagtttactagttgcgccaaggttacccctct 38478462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8197070 - 8197020
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  8197070 cctttcagtcacatgacaacaacttgaccagttgcaccaaggttacccctc 8197020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27474308 - 27474258
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  27474308 cctttcagtcacatgacaacaactttaccagttgagctaaggttacccctc 27474258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 30395865 - 30395903
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30395865 agtcacatgacaacaactttaccagttgcgccaaggtta 30395903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41319937 - 41319987
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  41319937 cctttcagtcacatgacaacaactttaccagttgtgtcaaggttacccctc 41319987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46991831 - 46991781
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||    
T  46991831 ccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctc 46991781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 45402114 - 45402077
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45402114 tcacatgacaacaactttaccagttgcgccaaggttac 45402077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33223011 - 33222971
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  33223011 cctttcagtcacatgacaacaactttaccggttgcgccaag 33222971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27201674 - 27201624
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||| || ||| |||||||| ||||    
T  27201674 cctttcagtcacatgacaacaactttaccatttacgctaaggttacccctc 27201624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9939488 - 9939443
Alignment:
Q  1 cctttcagtcacatgacaacaac-tttaccagttgcgccaaggtta 45  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  9939488 cctttcagtcacatgacaacaacttttaccggttgcgccaaggtta 9939443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19414466 - 19414421
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||    
T  19414466 cctttcagtcatatgacaacaactttaccaattacgccaaggttac 19414421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23768451 - 23768496
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||    
T  23768451 ccttacagtcacatgacaacaactttaccagttgcgtcgaggttac 23768496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 1084145 - 1084085
Alignment:
Q  86 tattacacagaaaagattacaaggaaaataagcatgaagatagtaatagcttgcagtacaa 146  Q
    |||||||||| |||||| ||||||| | ||||||||||||||  |||| ||||||||||||    
T  1084145 tattacacagtaaagataacaaggatattaagcatgaagataacaataacttgcagtacaa 1084085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4430157 - 4430197
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  4430157 ccttccagtcacatgacaacaactttaccagctgcgccaag 4430197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12126966 - 12127010
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||    
T  12126966 cctttcaattacatgacaacaactttacgagttgcgccaaggtta 12127010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18724676 - 18724715
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  18724676 cctttcagtcacatgacaacaactttacc-gttgcgccaag 18724715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20036247 - 20036208
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20036247 cctttcagtcacatgacaacaactttacca-ttgcgccaag 20036208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 21723686 - 21723646
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  21723686 cagtcacatgacaacaactttaccagttgtgcgaaggttac 21723646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10163777 - 10163734
Alignment:
Q  10 cacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||    
T  10163777 cacatgacaacaactttatcagttgcgccaatgttacccctcta 10163734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2435918 - 2435958
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  2435918 cctttcagtcacgtgacaacaactttacc-gttgcgccaagg 2435958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6983940 - 6983980
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  6983940 cctttcagtcacgtgacaacaactttacca-ttgcgccaagg 6983980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18335419 - 18335464
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||| |||||||||| ||||||| || |||||||||||||||    
T  18335419 cctttcagacacatgacaaaaactttatcacttgcgccaaggttac 18335464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21006171 - 21006126
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||| ||||||||||| |||||| |||||| |||||||||    
T  21006171 cctttcagtcgcatgacaacaattttaccggttgcgtcaaggttac 21006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22327126 - 22327086
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  22327126 cctttcagtcacatgacaacaactttgcc-gttgcgccaagg 22327086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28894664 - 28894704
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  28894664 tttcagtcacatgacaacaacttta-ctgttgcgccaaggtt 28894704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50811966 - 50811926
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  50811966 cctttcagtcacgtgacaacaactttacc-gttgcgccaagg 50811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52910244 - 52910204
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  52910244 cctttcagtcacatgacaacaactttacc-gttgcaccaagg 52910204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12670379 - 12670431
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12670379 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcta 12670431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30454226 - 30454276
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30454226 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 30454276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20869627 - 20869671
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20869627 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 20869671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35261683 - 35261631
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35261683 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctcta 35261631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7136660 - 7136711
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7136660 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctct 7136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24245455 - 24245404
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  24245455 cctttcagtcacatgacaacaactttaccagttgccccaaggttacccctct 24245404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39461127 - 39461177
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39461127 cctttcagtctcatgacaacaactttaccagttgcgccaaggttacccctc 39461177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 44530147 - 44530100
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggttactcctctat 54  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  44530147 agtcacatgacagcaactttaccagttgcgccaaggttacccctctat 44530100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2626523 - 2626473
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  2626523 cctttcggtcacatgacaacaactttaccaattgcgccaaggttacccctc 2626473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13160706 - 13160656
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  13160706 ccttacagtcacatgacaacaactttaccagttgcgccgaggttacccctc 13160656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17823580 - 17823530
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  17823580 cctttcggtcacatgacaacaactttaccagttgcgccaagattacccctc 17823530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28817757 - 28817807
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||    
T  28817757 ccttccagtcacatgacaacaactttaccagttgcaccaaggttacccctc 28817807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36720800 - 36720750
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  36720800 ccttccagtcacatgacaacaactttaccagttacgccaaggttacccctc 36720750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20284204 - 20284249
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  20284204 cctttcagtcacatgacaacaactttacccgttgcgtcaaggttac 20284249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21070833 - 21070878
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  21070833 cctttcagtcacatgacaacaactttacccgttgcgtcaaggttac 21070878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25250526 - 25250481
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  25250526 ccttccagtcacatgacaacaactttaccagttgtgccaaggttac 25250481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28407420 - 28407379
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  28407420 ccttccagtcacatgacaacaactttaccagttgcgccaagg 28407379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29521816 - 29521868
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  29521816 ccttccagtcacacgacaacaactttatcagttgcgccaaggttacccctcta 29521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 23286431 - 23286474
Alignment:
Q  8 gtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  23286431 gtcacatgacaacaactttaccagttgcgacaaggttacccctc 23286474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 45071261 - 45071214
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctctataa 56  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||    
T  45071261 tcacatgacaacaactttaccagtatcgccaaggttacccctctataa 45071214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18164890 - 18164940
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  18164890 cctttcagtcacatgacaacaacttcaccggttgcgccaagattacccctc 18164940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 40605044 - 40605086
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  40605044 tcacatgacaacaactttaccagttgcgccaaagttacccctc 40605086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 8897902 - 8897942
Alignment:
Q  8 gtcacatgacaacaactttaccagttgcgccaaggttactc 48  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  8897902 gtcacatgacaacaactttaccagttgtgccagggttactc 8897942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 6760820 - 6760786
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaag 41  Q
    ||||| |||||||||||||||||||||||||||||    
T  6760820 agtcatatgacaacaactttaccagttgcgccaag 6760786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 42840900 - 42840862
Alignment:
Q  14 tgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  42840900 tgacaacaactttactagttgcgccaaggttacccctct 42840862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 5688829 - 5688801
Alignment:
Q  13 atgacaacaactttaccagttgcgccaag 41  Q
    |||||||||||||||||||||||||||||    
T  5688829 atgacaacaactttaccagttgcgccaag 5688801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 44781638 - 44781677
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  44781638 ctttcagtcacgtgacaacaactttacc-gttgcgccaagg 44781677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12024049 - 12024101
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12024049 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctcta 12024101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14530322 - 14530272
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14530322 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 14530272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27573625 - 27573581
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27573625 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 27573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8455447 - 8455498
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8455447 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctct 8455498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7214538 - 7214484
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctata 55  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  7214538 cctttcagtcacatgacaacaactttaccagttgtgccaaagttacccctctata 7214484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21779390 - 21779440
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  21779390 cctttcagtcacatgacaacaacttcaccagttgcgccaaggttacccctc 21779440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23397770 - 23397720
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  23397770 cctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctc 23397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25079849 - 25079899
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  25079849 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 25079899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 27466262 - 27466312
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27466262 ctttcagtcacatgacaacaactttaccagttgcgccaatgttacgcctct 27466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 39189556 - 39189602
Alignment:
Q  5 tcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  39189556 tcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 39189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10543702 - 10543657
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10543702 cctttcagtcacatgacaacaactttatcagttgcgccaaggttac 10543657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11514440 - 11514395
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  11514440 ccttccagtcacatgacaacaactttaccagttgcgccaaggttac 11514395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14544067 - 14544022
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  14544067 cctttcagtcacatgacaacaactttaccaattgcgccaaggttac 14544022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 9671179 - 9671134
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  9671179 cagtcacatgacaacaactttaccggttgcgccaaggttacccctc 9671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17896263 - 17896218
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  17896263 cctttcggtcacatgacaacaactttaccagttgcgtcaaggttac 17896218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 22371056 - 22371011
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22371056 cagtcacatgacaacaactttaccagttgggccaaggttacccctc 22371011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25249868 - 25249913
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||    
T  25249868 ccttacagtcacatgacaacaactttaccaattgcgccaaggttac 25249913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 17705493 - 17705449
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  17705493 agtcacatgacaacaactttaccagttgcaccaaggttacccctc 17705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 24200758 - 24200801
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  24200758 tttcagtcacatgacaacaactttaccagttgcatcaaggttac 24200801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26684753 - 26684803
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||| ||||    
T  26684753 cctttcaatcacatgacaacaactttaccagttgcgctaaagttacccctc 26684803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 39499353 - 39499399
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctctata 55  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  39499353 tcacatgataacaactttaccagttgcgccaagattactgctctata 39499399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19977845 - 19977890
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  19977845 cctttcggtcacatgacaacaacttcaccagttccgccaaggttac 19977890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24860117 - 24860157
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  24860117 ccttccagtcacatgacaacaattttaccagttgcgccaag 24860157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5841032 - 5840982
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||| || |||| |||||||||| ||||    
T  5841032 ccttccagtcacatgacaacaactttatcatttgcaccaaggttacccctc 5840982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39914437 - 39914475
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgcca 39  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  39914437 ccttccagtcacatgacaacaactttaccagatgcgcca 39914475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4516482 - 4516522
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  4516482 cctttcagtcacgtgacaacaactttacc-gttgcgccaagg 4516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17668006 - 17667973
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttg 34  Q
    |||| |||||||||||||||||||||||||||||    
T  17668006 ccttccagtcacatgacaacaactttaccagttg 17667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21377204 - 21377232
Alignment:
Q  1 cctttcagtcacatgacaacaactttacc 29  Q
    |||||||||||||||||||||||||||||    
T  21377204 cctttcagtcacatgacaacaactttacc 21377232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47077984 - 47078035
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47077984 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctct 47078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32758265 - 32758215
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32758265 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 32758215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48735252 - 48735302
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48735252 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 48735302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22699101 - 22699153
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  22699101 cctttcagtcacatgacaacaactttaccagttgcgtcaaggttacccctcta 22699153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 14732955 - 14732998
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14732955 tttcagtcacatgacaacaactttaccagttgcgccaaggttac 14732998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21172138 - 21172189
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  21172138 cctttcagttacatgacaacaactttaccagttgcgccaaggttacccctct 21172189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42798673 - 42798622
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  42798673 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctct 42798622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43557476 - 43557425
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  43557476 cctttcagtcacatgacaacaactttaccagttgcggcaaggttacccctct 43557425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42495966 - 42496016
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  42495966 cctttcagtcatatgacaacaactttaccagttgcgccaaggttacccctc 42496016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2541156 - 2541201
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2541156 cagtcacatgacaacaactttaccagttgcgccaaggttacccctc 2541201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5180288 - 5180333
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  5180288 cctttcagtcacatgacaacaactttaccagttgcgtcaaggttac 5180333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35334945 - 35334989
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  35334945 ccttccagtcacatgacaacaactttaccagttgcgccaaggtta 35334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 46354190 - 46354146
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctcta 53  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  46354190 tcacatgacaacaactttaccagttgcgccaaggttacccctcta 46354146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10693202 - 10693245
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  10693202 cctttcagtcacatgacaacaactttactagttgcgccaaggtt 10693245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11617719 - 11617762
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  11617719 cctttcagtcacatgacaacaactttaccagttgcgccgaggtt 11617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 18327032 - 18326993
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18327032 agtcacatgacaacaactttaccagttgcgccaaggttac 18326993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7193089 - 7193039
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  7193089 cctttcagtcacatgacaacaactttacaagttacgccaaggttacccctc 7193039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34626338 - 34626388
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  34626338 cctttcaatcacatgacaacaactttaccagttgcgctaaggttacccctc 34626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42805528 - 42805478
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  42805528 ccttccagtcacatgacaacaactttaccagttacgccaaggttacccctc 42805478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29140491 - 29140536
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29140491 cctttcagttacatgacaacaactttaccagttgcgccaagattac 29140536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25198725 - 25198681
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  25198725 ctttcagtcatatgacaacaactttaccagttacgccaaggttac 25198681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40463881 - 40463837
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  40463881 ccttacagtcacatgacaacaactttaccggttgcgccaaggtta 40463837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19427020 - 19427059
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaa 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  19427020 cctttcggtcacatgacaacaactttaccagttgcgccaa 19427059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27629638 - 27629596
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggt 43  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  27629638 cctttcggtcaaatgacaacaactttaccagttgcgccaaggt 27629596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42476877 - 42476827
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||| ||||    
T  42476877 ccttttagtcacatgacaacaactttaccagttacgccaatgttacccctc 42476827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2663067 - 2663112
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  2663067 cagtcacataacaacaactttactagttgcgccaaggttacccctc 2663112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3469310 - 3469350
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  3469310 cctttcagtcacatgacaacaactttacc-gttgcgccaagg 3469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7794637 - 7794682
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||    
T  7794637 ccttccagtcacataacaacaactttaccagttgcgctaaggttac 7794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13805106 - 13805066
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  13805106 cctttcagtcacatgacaacaactttacca-ttgcgccaagg 13805066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1424041 - 1424085
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||    
T  1424041 ccttccagtcacataacaacaactttaccagttgcgccaaagtta 1424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8149082 - 8149122
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  8149082 cagtcacatgacaacaacattaccagttgtgccaaggttac 8149122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12473308 - 12473258
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||  ||||||||||||||||||| |||||||||||| ||| ||||    
T  12473308 cctttcagatacatgacaacaactttaccggttgcgccaaggctacccctc 12473258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28078262 - 28078312
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||| || |||||||||| |||||| ||||    
T  28078262 ccttacagtcacatgacaacaacttcacgagttgcgccagggttacccctc 28078312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33872040 - 33872070
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccag 31  Q
    |||||||||||||||||||||||||||||||    
T  33872040 cctttcagtcacatgacaacaactttaccag 33872070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47716463 - 47716413
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||| |||||||||| ||||||| ||||||||||| ||||    
T  47716463 ccttccagtcacatggcaacaacttttccagttgtgccaaggttacccctc 47716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19266454 - 19266414
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  19266454 cctttcagtcacatgacaacaactttacc-gttgcaccaagg 19266414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28362276 - 28362316
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  28362276 cctttcagccacatgacaacaactttacc-gttgcgccaagg 28362316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 28685266 - 28685299
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgc 35  Q
    |||||||||||||||||||||||||| |||||||    
T  28685266 ctttcagtcacatgacaacaactttaacagttgc 28685299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45019007 - 45019052
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||    
T  45019007 ccttccagtcacatgacaggacctttaccagttgcgccaaggttac 45019052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14099137 - 14099165
Alignment:
Q  1 cctttcagtcacatgacaacaactttacc 29  Q
    |||||||||||||||||||||||||||||    
T  14099137 cctttcagtcacatgacaacaactttacc 14099165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14409154 - 14409182
Alignment:
Q  1 cctttcagtcacatgacaacaactttacc 29  Q
    |||||||||||||||||||||||||||||    
T  14409154 cctttcagtcacatgacaacaactttacc 14409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 21447584 - 21447544
Alignment:
Q  11 acatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  21447584 acatgacaacaaatttatcagttgcgccaaggttacccctc 21447544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 39123892 - 39123857
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgcca 39  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39123892 tttcagtcacatgacaacaactttacca-ttgcgcca 39123857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1565435 - 1565384
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1565435 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctct 1565384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38879585 - 38879535
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38879585 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 38879535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43334206 - 43334161
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43334206 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 43334161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24448894 - 24448844
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  24448894 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 24448844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35710317 - 35710267
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  35710317 cctttcagttacatgacaacaactttaccagttgcgccaaggttacccctc 35710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37024685 - 37024735
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  37024685 cctttcagtcacatgacaacaactttaccagttgcaccaaggttacccctc 37024735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41014323 - 41014273
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  41014323 ccttccagtcacatgacaacaactttaccagttgcgccaaggttacccctc 41014273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4619237 - 4619282
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  4619237 ccttccagtcacatgacaacaactttaccagttgcgccaaggttac 4619282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8170113 - 8170157
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  8170113 cctttcggtcacatgacaacaactttaccagttgcgccaaggtta 8170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 19438752 - 19438702
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  19438752 cttttagtcatatgacaacaactttaccagttgcgccaaggttacccctct 19438702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22861797 - 22861842
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  22861797 cctttcagtcacatgacaacaactttatcagttgtgccaaggttac 22861842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27328756 - 27328711
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  27328756 cctttcagtcacatgacaacaactttaccaattgcgtcaaggttac 27328711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 2838777 - 2838737
Alignment:
Q  6 cagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  2838777 cagtcacatgacaacaactttaccggttgcgccaaggttac 2838737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 31299630 - 31299591
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  31299630 agtcacatgacaacaactttaccagttgcaccaaggttac 31299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22187289 - 22187239
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||| ||||    
T  22187289 cctttcagtcaaatgacaacaactttactagttgcgccaaagttacccctc 22187239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23974784 - 23974735
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  23974784 ccttccagtcacatgacaacaactttacc-gttgcgccaaggttacccctc 23974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30006329 - 30006285
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||||||||||||||||||||| |||| |||||||||||| ||||    
T  30006329 cctttcagtcacatgacaacaaatttatcagttgcgccaatgtta 30006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12006461 - 12006500
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaa 40  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  12006461 cctttcagtcacatgacaacaacttgagcagttgcgccaa 12006500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22600458 - 22600408
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| ||||||||||| |||||||||||||||| || ||||||||| ||||    
T  22600458 ccttccagtcacatgataacaactttaccagttacgtcaaggttacccctc 22600408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 41956924 - 41956886
Alignment:
Q  13 atgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  41956924 atgacaacaactttaccagttgcgccaatgttacccctc 41956886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39079897 - 39079937
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  39079897 cctttctgtcacatgacaacaactttacc-gttgcgccaagg 39079937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39301127 - 39301087
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  39301127 cctttcagtaacatgacaacaactttacc-gttgcgccaagg 39301087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30583 - 30533
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30583 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 30533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24898 - 24948
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24898 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 24948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 46829 - 46794
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||||||||||||||||||||||| |||||||||||    
T  46829 agtcacatgacaacaactttaccaattgcgccaagg 46794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1346968 - 1346918
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1346968 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 1346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1354886 - 1354936
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1354886 cctttcagtcacatgacaacaactttaccagttgcgccaaggttacccctc 1354936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 3815210 - 3815253
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3815210 tttcagtcacatgacaacaactttaccagttgcgccaaggttac 3815253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8409247 - 8409197
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8409247 cctttcagtcacattacaacaactttaccagttgcgccaaggttacccctc 8409197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24734637 - 24734592
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  24734637 cctttcagtcacatgacaacaactttaccagttgcgccaatgttac 24734592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12222048 - 12222088
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12222048 cctttcagtcacatgacaacaactttaccagttgcgccaag 12222088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20400671 - 20400616
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctataa 56  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||    
T  20400671 cctttcagtcacatgacaacaactataccaattgcgccaaggttacctctctataa 20400616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 33922961 - 33923010
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttactcctct 52  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  33922961 tttcagtcaaatgacaacaactttaccggttgcgccaaggttacccctct 33923010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14975211 - 14975255
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtta 45  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  14975211 ccttccagtcacatgacaacaactttaccggttgcgccaaggtta 14975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13905110 - 13905152
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  13905110 cctttcagtcacatgacaacaactttacc-gttgcgccaaggtt 13905152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 19649299 - 19649338
Alignment:
Q  2 ctttcagtcacatgacaacaactttaccagttgcgccaag 41  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  19649299 ctttcagtcacatgacaacaactttatcagttgcgccaag 19649338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1941859 - 1941809
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  1941859 ccttccagtcagatgacaacaactttaccagttgcaccaaggttacccctc 1941809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9161127 - 9161077
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||| ||||    
T  9161127 cctttcagtcacatgacaacaactttaccgattgcgtcaaggttacccctc 9161077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15866168 - 15866218
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||| ||||    
T  15866168 cctttcaatcacatgccaacaactttaccagttgggccaaggttacccctc 15866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6024229 - 6024173
Alignment:
Q  9 tcacatgacaacaactttaccagttgcgccaaggttactcctctataatgatttcac 65  Q
    |||||||||||||||||||||||||||| |||  |||| |||||| ||| |||||||    
T  6024229 tcacatgacaacaactttaccagttgcgtcaaaattacccctctaaaatcatttcac 6024173  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 8417474 - 8417442
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgc 35  Q
    |||||||||||||||||||||||||||||||||    
T  8417474 tttcagtcacatgacaacaactttaccagttgc 8417442  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29355988 - 29356039
Alignment:
Q  1 cctttcagtcacatgacaacaa-ctttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||    
T  29355988 cctttcagtcacatgacaacaatttttaccagttgtgccaaggttacccctc 29356039  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2166543 - 2166587
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||    
T  2166543 cctttcagtcacataacaacaactttactagttgcg-caaggttac 2166587  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2178176 - 2178220
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||    
T  2178176 cctttcagtcacataacaacaactttactagttgcg-caaggttac 2178220  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 14553510 - 14553477
Alignment:
Q  7 agtcacatgacaacaactttaccagttgcgccaa 40  Q
    ||||||||||||||||||||||||||||| ||||    
T  14553510 agtcacatgacaacaactttaccagttgcaccaa 14553477  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32728287 - 32728332
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||  ||| | ||||||||||    
T  32728287 cctttcagtcacatgacaacaactttactcgttccaccaaggttac 32728332  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2755555 - 2755583
Alignment:
Q  1 cctttcagtcacatgacaacaactttacc 29  Q
    |||||||||||||||||||||||||||||    
T  2755555 cctttcagtcacatgacaacaactttacc 2755583  T

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Target: scaffold0005 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 226537 - 226582
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  226537 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 226582  T

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Target: scaffold0258 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13154 - 13212
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctctataatga 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||    
T  13154 cctttcagtcacatgacaacaactttaccggttgcgccaaggttaccccactatgatga 13212  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 83879 - 83829
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  83879 cctttcagtcacatgacaacaactttactagttgcgccaaggttacccctc 83829  T

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Target: scaffold0187 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10179 - 10224
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  10179 cctttcagtcacatgacaacaactttaccagttgcgtcaaggttac 10224  T

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Target: scaffold0187; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20507 - 20552
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  20507 cctttcagtcacatgacaacaactttaccagttgcgtcaaggttac 20552  T

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Target: scaffold0187; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 8947 - 8899
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  8947 tttcagtcacatgacaacaacttcaccggttgcgccaaggttacccctc 8899  T

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Target: scaffold0187; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 19275 - 19227
Alignment:
Q  3 tttcagtcacatgacaacaactttaccagttgcgccaaggttactcctc 51  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  19275 tttcagtcacatgacaacaacttcaccggttgcgccaaggttacccctc 19227  T

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Target: scaffold1176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1716 - 1758
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggt 43  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  1716 cctttcagtcacatgacaacaactttaccaattgcgtcaaggt 1758  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 58981 - 58935
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttact 47  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||    
T  58981 cctttcagtcacatgacaataagtttaccagttgctccaaggttact 58935  T

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Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10814 - 10773
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaagg 42  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  10814 ccttccagtcacatgacaacaactttaccagttgcaccaagg 10773  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 73001 - 73034
Alignment:
Q  10 cacatgacaacaactttaccagttgcgccaaggt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  73001 cacatgacaacaactttaccagttgcgccaaggt 73034  T

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Target: scaffold0223 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11135 - 11093
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggtt 44  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  11135 cctttcagtcacat-agaacaactttaccagttgcgccaaggtt 11093  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4161 - 4117
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgccaaggttac 46  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||    
T  4161 cctttcagtcacataacaacaactttactagttgcg-caaggttac 4117  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43133 - 43097
Alignment:
Q  1 cctttcagtcacatgacaacaactttaccagttgcgc 37  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  43133 cctttcaatcacatgacaataactttaccagttgcgc 43097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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