View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_25 (Length: 279)
Name: NF18847_low_25
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 50230350 - 50230094
Alignment:
| Q |
18 |
aactattatgatcatcatcatcgtcaggatcatgtgattggaatcttgatagttccacagctgctctagcagcagctgcagcatatgcagctgattcaaa |
117 |
Q |
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| T |
50230350 |
aactattatgatcatcatcatcgtcaggatcatgtgattggaatcttgatagttccacagctgctctagcagcagctgcagcatatgcagctgattcaaa |
50230251 |
T |
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| Q |
118 |
agctgcctgtgctgcatcagctacatccttatactttttcctacccttaaaggactcagaaaattcatcactttttccttcattaactaaaatgtggaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50230250 |
agctgcctgtgctgcatcagctacatccttatactttttcctacccttaaaggagtcagaaaattcatcactttttccttcattaactaaaatgtggaca |
50230151 |
T |
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| Q |
218 |
ttttcatcttgcttgatctcagatttgtgctggttttgcttttcctcctttgctact |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50230150 |
ttttcatcttgcttgatctcagatttgtgctggttttgcttttcctcctttgttact |
50230094 |
T |
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