View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18847_low_26 (Length: 269)

Name: NF18847_low_26
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18847_low_26
NF18847_low_26
[»] chr3 (2 HSPs)
chr3 (187-265)||(8522320-8522398)
chr3 (43-92)||(8522147-8522196)
[»] chr6 (1 HSPs)
chr6 (184-255)||(25523842-25523913)
[»] chr5 (5 HSPs)
chr5 (39-92)||(42116801-42116854)
chr5 (200-265)||(42116959-42117024)
chr5 (40-69)||(34233805-34233834)
chr5 (184-213)||(42122700-42122729)
chr5 (184-213)||(42128095-42128124)
[»] chr4 (1 HSPs)
chr4 (184-213)||(11117357-11117386)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 8522320 - 8522398
Alignment:
Q  187 gacatttgcaccatctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgtccttcatctcactc 265  Q
    ||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||| | ||||||    
T  8522320 gacatttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactc 8522398  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8522147 - 8522196
Alignment:
Q  43 aacttggaattttattatataacacatcttgtggcatgcacttataaaca 92  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8522147 aacttggaattttattatataacacaacttgtggcatgcacttataaaca 8522196  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 25523913 - 25523842
Alignment:
Q  184 tatgacatttgcaccatctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgtcctt 255  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||    
T  25523913 tatgacatttgcatcatctgattctgattctgattcatggctgtaccatgattcctcctcattcttgtcctt 25523842  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 42116801 - 42116854
Alignment:
Q  39 tataaacttggaattttattatataacacatcttgtggcatgcacttataaaca 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  42116801 tataaacttggaattttattatataacacatcttgtggcatgcacatgtaaaca 42116854  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 42116959 - 42117024
Alignment:
Q  200 tctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgtccttcatctcactc 265  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||| | ||||||    
T  42116959 tctgattctgattctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactc 42117024  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 34233834 - 34233805
Alignment:
Q  40 ataaacttggaattttattatataacacat 69  Q
    ||||||||||||||||||||||||||||||    
T  34233834 ataaacttggaattttattatataacacat 34233805  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 42122700 - 42122729
Alignment:
Q  184 tatgacatttgcaccatctgattctgattc 213  Q
    ||||||||||||||||||||||||||||||    
T  42122700 tatgacatttgcaccatctgattctgattc 42122729  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 42128095 - 42128124
Alignment:
Q  184 tatgacatttgcaccatctgattctgattc 213  Q
    ||||||||||||||||||||||||||||||    
T  42128095 tatgacatttgcaccatctgattctgattc 42128124  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 11117357 - 11117386
Alignment:
Q  184 tatgacatttgcaccatctgattctgattc 213  Q
    ||||||||||||||||||||||||||||||    
T  11117357 tatgacatttgcaccatctgattctgattc 11117386  T

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