View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_27 (Length: 268)
Name: NF18847_low_27
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 7724411 - 7724170
Alignment:
| Q |
17 |
acatacctatcagtattcgtgtatatgaacgtgtgtggtatggaattcagcaaaaatatatataaataaaaacaacaaatatgtatagtatttcatgcac |
116 |
Q |
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| T |
7724411 |
acatacctatctgtattcgtgtatatgaacgtgtgtggtgtggaattcagcaaaaatatatataaataaaaacaacaaatatgtatagtatttcatgcac |
7724312 |
T |
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| Q |
117 |
actatagacttgcaattgagatagtgtatatgcaagtctttgtnnnnnnnnnnngaagtaggttgttatacatctaactgaaagagaaagttaattaaag |
216 |
Q |
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| T |
7724311 |
actatagacttgcaattgagatagtgtatatgcaagtctttgtgaaaaaaa----aagtaggttgttatacatctaactgaaagagaaagttaattaaag |
7724216 |
T |
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| Q |
217 |
tagtcgatnnnnnnnnnnnngacaaactaagaatatagaattatct |
262 |
Q |
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| T |
7724215 |
tagtcgataaaaaataaaaagacaaactaagaatatagaattatct |
7724170 |
T |
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