View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18847_low_3 (Length: 613)
Name: NF18847_low_3
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 41066819 - 41066223
Alignment:
| Q |
1 |
atctttacttaaaactttaaggggcgaactatatgagtcatttcttttatatatcttccgcacgtactgaagttccacacatgcttgtacaatgcttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066819 |
atctttacttaaaactttaaggggcgaactatatgagtcatttcttttatatatcttccgcacgtactgaagttccacacatgcttgtacaatgcttcca |
41066720 |
T |
|
| Q |
101 |
ctttgtccttttctttaacctttgctgtaaatccattacaaaagagaactatatatagtttgatgatgaaggataaaagaactgtctacatctttatcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066719 |
ctttgtccttttctttaacctttgctgtaaatccattacaaaagagaactatatatagtttgatgatgaaggataaaagaactgtctacatctttatcag |
41066620 |
T |
|
| Q |
201 |
taactttaagtgaagatacgagaattttaatatccaacaagtatcaaatgatacagagaaaaatagagagtagtaacacagaaaaaatagtactgctgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
41066619 |
taactttaagtgaagatacgagaattttaatatccaacaagtatcaaatgataaagagaaaaatagagagtagtaacatagaaaaactagtactgctgct |
41066520 |
T |
|
| Q |
301 |
atgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgtttctcactatctccttgtttcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066519 |
atgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgtttctcactatctccttgtttcca |
41066420 |
T |
|
| Q |
401 |
ttcatttcttctctaaaccaagaaggtctctctctactttcatggctttcaactttcaactcctcaaattctgtccctaccactactttctcatcatggg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066419 |
ttcatttcttctctaaaccaagaaggtctctctctactttcatggctttcaactttcaactcctcaaattctgtccctaccactactttctcatcatggg |
41066320 |
T |
|
| Q |
501 |
atccaactcacaaaaatccttgcagatgggattatataaaatgttctgcagaggagtttgttgaagagatcgtaataacatcgatcgatcttcatag |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066319 |
atccaactcacaaaaatccttgcagatgggattatataaaatgttctgcagcagagtttgttgaagagatcgtaataacatcgatcgatcttcatag |
41066223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University